Construct: ORF TRCN0000477478

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014928.1_s317c1
Derived from:
ccsbBroadEn_02735
DNA Barcode:
AGACCTCGAGCGATCGCGGAACCC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAF2 (23197)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477478
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23197 FAF2 Fas associated factor famil... NM_014613.3 100% 100%
2 human 23197 FAF2 Fas associated factor famil... XM_011534475.3 89.8% 89.8% 131_132ins135
3 mouse 76577 Faf2 Fas associated factor famil... NM_178397.3 90.4% 97.7% (many diffs)
4 mouse 76577 Faf2 Fas associated factor famil... XM_006517452.3 84.6% 91.6% (many diffs)
5 mouse 76577 Faf2 Fas associated factor famil... XM_011244582.2 84.6% 91.6% (many diffs)
6 mouse 76577 Faf2 Fas associated factor famil... XM_011244583.2 84.6% 91.6% (many diffs)
7 mouse 76577 Faf2 Fas associated factor famil... XM_017315634.1 47.7% 53.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1404
ORF length:
1335
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcggcgcct gaggagcggg atctaaccca ggagcagaca gagaagctgc
121tgcagtttca ggatctcact ggcatcgaat ctatggatca gtgtcgccat accttggaac
181agcataactg gaacatagag gctgctgtac aggacagatt gaatgagcaa gagggcgtac
241ctagtgtttt caacccacct ccatcacgac ccctgcaggt taatacagct gaccacagga
301tctacagcta tgttgtctca agacctcaac caagggggct gcttggatgg ggttattact
361tgataatgct tccattccgg tttacctatt acacgatact tgatatattt aggtttgctc
421ttcgttttat acggcctgac cctcgcagcc gggtcactga ccccgttggg gacattgttt
481catttatgca ctcttttgaa gagaaatatg ggagggcaca ccctgtcttc taccagggaa
541cgtacagcca ggcacttaac gatgccaaaa gggagcttcg ctttcttttg gtttatcttc
601atggagatga tcaccaggac tctgatgagt tttgtcgcaa cacactctgt gcacctgaag
661ttatttcact aataaacact aggatgctct tctgggcatg ctctacaaac aaacctgagg
721gatacagggt ctcacaggct ttacgagaga acacctatcc attcctggcc atgattatgc
781tgaaggatcg aaggatgact gtggtgggac ggctagaagg cctcattcaa cctgatgacc
841tcattaacca actgacattt atcatggatg ctaaccagac ttacctggtg tcagaacgcc
901tagaaaggga agaaagaaac cagacccaag tgctgagaca acagcaggat gaggcctacc
961tggcctctcT CAGAGCTGAC CAGGAGAAAG AAAGAAAGAA ACGGGAGGAG CGGGAGCGTA
1021AGCGGCGGAA GGAGGAGGAG GTGCAACAGC AAAAGTTGGC AGAGGAGAGA CGGCGGCAGA
1081ATTTACAGGA GGAAAAGGAA AGGAAGTTGG AATGCCTGCC CCCTGAACCT TCCCCTGATG
1141ACCCTGAAAG TGTCAAGATC ATCTTCAAAT TACCTAATGA TTCTCGAGTA GAGAGACGAT
1201TCCACTTTTC ACAGTCTCTA ACAGTAATCC ACGACTTCTT ATTCTCCTTG AAGGAAAGCC
1261CAGAAAAGTT TCAGATTGAA GCCAATTTTC CCAGGCGAGT GCTGCCCTGC ATCCCTTCAG
1321AGGAGTGGCC CAATCCCCCT ACGCTACAGG AGGCCGGACT CAGCCACACA GAAGTTCTTT
1381TTGTTCAGGA CCTAACTGAC GAATTGCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1441AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1501TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAA GACCTCGAGC
1561GATCGCGGAA CCCACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1621att

Download FASTA (ORF) (Full)