Construct: ORF TRCN0000477484

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007528.1_s317c1
Derived from:
ccsbBroadEn_05730
DNA Barcode:
GGCCATAGCACGCACAAACGTCAA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LRTM2 (654429)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477484
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 654429 LRTM2 leucine rich repeats and tr... NM_001039029.3 100% 100%
2 human 654429 LRTM2 leucine rich repeats and tr... NM_001163925.1 100% 100%
3 human 654429 LRTM2 leucine rich repeats and tr... NM_001163926.2 100% 100%
4 human 654429 LRTM2 leucine rich repeats and tr... XM_011521015.1 100% 100%
5 human 654429 LRTM2 leucine rich repeats and tr... XM_017019848.1 86.6% 86.6% 1_171del
6 mouse 211187 Lrtm2 leucine-rich repeats and tr... NM_001172207.1 86.1% 92.1% (many diffs)
7 mouse 211187 Lrtm2 leucine-rich repeats and tr... NM_172492.3 86.1% 92.1% (many diffs)
8 mouse 211187 Lrtm2 leucine-rich repeats and tr... XM_006505849.3 86.1% 92.1% (many diffs)
9 mouse 211187 Lrtm2 leucine-rich repeats and tr... XM_011241276.2 86.1% 92.1% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1179
ORF length:
1110
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gctggcgccg ggcagcagcc ctgggcagag gggcaggctc gccctgcagt
121ggaggcaagt ctcctggatc acctgctgga tcgccctgta tgctgtggag gccctcccca
181cctgcccttt ctcctgcaag tgtgacagcc gcagcctgga ggtggactgc agtggccttg
241gcctcaccac ggtgccccca gacgtgcccg cagccacccg aaccctcttg ctcttgaaca
301ataagctgag tgccctgcca agctgggctt tcgccaacct ctccagcctg cagcggttgg
361acctgtccaa caacttcctg gaccggctgc cccgctccat tttcggggac ctgacgaatc
421tgactgagct tcagctgcgc aataacagca tcaggaccct ggacagggac ctgctgcggc
481actcgccgct gctccgccac ctggacctgt ccatcaacgg cctggcccag ttgccccctg
541gtcttttcga cgggctcctg gctctgcgct ccctctcgct tcgctccaac cgtctgcaga
601atctggaccg gctgacattt gaacccctag caaacctgca gctgctgcag gtcggggata
661acccctggga gtgtgactgt aacctgcgtg agttcaaaca ctggatggag tggttctcct
721accgaggggg acgcttggac cagcttgcct gcaccctgcc caaggagctg agggggAAGG
781ACATGCGGAT GGTCCCCATG GAGATGTTCA ACTACTGCTC CCAGCTGGAG GACGAGAATA
841GCTCAGCTGG GCTGGATATT CCTGGGCCAC CCTGCACCAA GGCCAGTCCA GAGCCTGCTA
901AGCCCAAGCC CGGGGCTGAG CCGGAGCCGG AGCCCAGCAC AGCCTGCCCA CAGAAGCAGA
961GGCACCGGCC GGCGAGCGTG AGGCGAGCCA TGGGCACGGT GATCATTGCA GGGGTCGTGT
1021GCGGCGTCGT CTGCATCATG ATGGTGGTGG CCGCTGCCTA TGGCTGCATC TACGCCTCCC
1081TCATGGCCAA GTACCACCGG GAGCTCAAAA AGCGCCAGCC CCTGATGGGG GACCCCGAGG
1141GCGAGCACGA GGACCAGAAG CAGATCTCTT CTGTGGCCTT GCCAACTTTC TTGTACAAAG
1201TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1261GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1321ACGAGGCCAT AGCACGCACA AACGTCAAAC GCGTTAAGTC gacaatcaac ctctggatta
1381caaaatttgt gaaagatt

Download FASTA (ORF) (Full)