Construct: ORF TRCN0000477500

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018019.1_s317c1
Derived from:
ccsbBroadEn_12014
DNA Barcode:
GTGAAATTAGTTGTGCGCCCTTTT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WWOX (51741)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477500
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51741 WWOX WW domain containing oxidor... NM_130791.4 76.1% 75.6% (many diffs)
2 human 51741 WWOX WW domain containing oxidor... NR_120436.2 61.5% (many diffs)
3 human 51741 WWOX WW domain containing oxidor... NM_016373.4 56.5% 56.5% 516_1055del
4 human 51741 WWOX WW domain containing oxidor... NM_001291997.2 29.2% 29.2% 0_1ins339;177_716del
5 mouse 80707 Wwox WW domain-containing oxidor... XM_006531515.3 74.7% 70.7% (many diffs)
6 mouse 80707 Wwox WW domain-containing oxidor... NM_019573.3 49.1% 53.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
768
ORF length:
702
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc agcgctgcgc tacgcggggc tggacgacac ggacagtgag gacgagctgc
121ctccgggctg ggaggagaga accaccaagg acggctgggt ttactacgcc aatcacaccg
181aggagaagac tcagtgggaa catccaaaaa ctggaaaaag aaaacgagtg gcaggagatt
241tgccatacgg atgggaacaa gaaactgatg agaacggaca agtgtttttt gttgaccata
301taaataaaag aaccacctac ttggacccaa gactggcgtt tactgtggat gataatccga
361cCAAGCCAAC CACCCGGCAA AGATACGACG GCAGCACCAC TGCCATGGAA ATTCTCCAGG
421GCCGGGATTT CACTGGCAAA GTGGTTGTGG TCACTGGAGC TAATTCAGGA ATAGGGTTCG
481AAACCGCCAA GTCTTTTGCC CTCCATGGTG CACATGTGAT CTTGGCCTGC AGGAACATGG
541CAAGGGCGAG TGAAGCAGTG TCACGCATTT TAGAAGAATG GCAACAGGGA GCTGCCACCA
601CCGTGTACTG TGCTGCTGTC CCAGAACTGG AGGGTCTGGG AGGGATGTAC TTCAACAACT
661GCTGCCGCTG CATGCCCTCA CCAGAAGCTC AGAGCGAAGA GACGGCCCGG ACCCTGTGGG
721CGCTCAGCGA GAGGCTGATC CAAGAACGGC TTGGCAGCCA GTCCGGCTAC CCAACTTTCT
781TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
841CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
901GTGGAAAGGA CGAGTGAAAT TAGTTGTGCG CCCTTTTACG CGTTAAGTCg acaatcaacc
961tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)