Construct: ORF TRCN0000477556

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012209.1_s317c1
Derived from:
ccsbBroadEn_07969
DNA Barcode:
AGTACAGGTGTTCAGATGACTCCA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM98A (25940)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477556
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 25940 FAM98A family with sequence simila... NM_015475.5 99.9% 99.8% 1339A>G
2 human 25940 FAM98A family with sequence simila... NM_001304538.1 62.2% 62.1% 0_1ins585;754A>G
3 mouse 72722 Fam98a family with sequence simila... NM_133747.2 91.2% 94.9% (many diffs)
4 mouse 72722 Fam98a family with sequence simila... XM_017317659.1 55.6% 58.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1623
ORF length:
1554
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggagtgtgac ctcatggaga ctgacatctt ggagtcgttg gaagatctag
121gttacaaggg cccattgttg gaagatggag cgctctctca ggcagtctct gctggagcca
181gttcccccga gtttaccaaa ctctgtgctt ggctggtgtc tgaattaaga gtgctctgta
241aactagagga aaacgtgcaa gcaactaaca gtccgagtga agctgaagaa ttccagcttg
301aggtgagtgg gctactaggg gagatgaact gcccgtatct ttcactgaca tctggggatg
361tgaccaagcg ccttctcatt cagaagaact gcctcctctt gctcacatac ctcatctcag
421aactagaagc tgccagaatg ctctgtgtga atgctcctcc aaaaaaagct caagaaggag
481gcggtagtga ggtctttcaa gagttgaaag gcatatgtat tgctctagga atgtccaaac
541ctccagccaa tataactatg ttccaattct tcagcgggat tgaaaaaaaa ttaaaggaaa
601cattagcaaa agttccacct aatcatgtgg gaaagccttt actgaagaag ccaatgggac
661cagcccactg ggaaaagata gaagcaatta accaagccat agccaatgaa tatgaagtcc
721ggagaaagct gctaataaaa cgtttggatg tcactgtaca atcctttggc tggtctgaca
781gagctaagag ccagacagaa aaattagcca aggtttacca gccgaaacgt tcagtcttat
841cccctaaaac tactatttct gttgcccatc ttttggctgc aaggcaggac ttgtcaaaga
901ttttaaggac aagcagcggc tctataagag aaaagactgc ctgtgccatc aataaggtgt
961tgatgggcag ggtgcctgac agaggtggta gacccaatga aatcgaacct ccacccccag
1021agatgccacc gtggcagaag aggcaagatg gcccccagca gcaaacagga ggccgaggag
1081gagggagagg tggctatgaa cattcctcat acggaggacg aggaggtcat gaacaaggag
1141gcgggagagg tggacgtggt ggctatgacc atggtggccg agggggagga agaggaaata
1201agcatcaagg aggctggaca gatggaggga gtggtggagg aggtggctac caagatggtg
1261gttatcgaga ttcaggtttc cagccaggtg gctatcatgg tggccacagc agtggtggct
1321atcaaggcgg aggttatggt ggcttccaaa catcttcttc atatacagga agtggatacc
1381agggtggtgg ctaccagcag gacaatggat accaagatgg cgggcaccat ggtgATCGTG
1441GTGGTGGTCG TGGTGGGCGA GGTGGTCGTG GAGGCCGAGG TGGTCGTGCA GGCCAGGGAG
1501GAGGCTGGGG AGGAAGAGGG AGCCAGAATT ATCACCAAGG GGGTCAATTT GAACAGCATT
1561TCCAGCATGG AGGTTATCAG TATAATCATT CTGGATTTGG ACAGGGAAGA CATTACACTA
1621GTTTGCCAAC TTTCTTGTAC AAAGTGGTTG ATATCGGTAA GCCTATCCCT AACCCTCTCC
1681TCGGTCTCGA TTCTACGTAG TAATGAACTA GTCCGTAACT TGAAAGTATT TCGATTTCTT
1741GGCTTTATAT ATCTTGTGGA AAGGACGAAG TACAGGTGTT CAGATGACTC CAACGCGTTA
1801AGTCgacaat caacctctgg attacaaaat ttgtgaaaga tt

Download FASTA (ORF) (Full)