Construct: ORF TRCN0000477660

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014324.1_s317c1
Derived from:
ccsbBroadEn_13053
DNA Barcode:
GATAGCAACATACCAAAAAGTTCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TTC6 (319089)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477660
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 319089 TTC6 tetratricopeptide repeat do... NM_001368142.1 64.5% 61.7% (many diffs)
2 human 319089 TTC6 tetratricopeptide repeat do... XM_011537431.2 37.8% 36.3% (many diffs)
3 human 319089 TTC6 tetratricopeptide repeat do... XM_011537430.2 35% 33.7% (many diffs)
4 human 319089 TTC6 tetratricopeptide repeat do... XM_017021256.1 31.8% 30.5% (many diffs)
5 human 319089 TTC6 tetratricopeptide repeat do... NM_001310135.2 26.4% 25.4% (many diffs)
6 human 319089 TTC6 tetratricopeptide repeat do... XM_024449560.1 26.3% 25.2% (many diffs)
7 human 319089 TTC6 tetratricopeptide repeat do... XM_017021254.1 23.8% 22.7% (many diffs)
8 human 319089 TTC6 tetratricopeptide repeat do... XR_943762.2 23.1% 1_4763del;4856C>T;6372_6951del
9 human 319089 TTC6 tetratricopeptide repeat do... XM_017021255.1 21.5% 20.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1677
ORF length:
1608
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggacaaaggt ctcagtgagt tgagtcctat gcagcaagcc cttatttatt
121cattttgtga aaaccatgac aaggccattg aggtcttgga tggaatcagc tggaatagag
181ctgagatgac catgtgtgct ctattagcaa aagttcaaat gaaggccaag agaaccaagg
241aagctgtgga agtgcttaag aaggctttgg atgccatttc tcattctgat aaaggaccag
301atgccacagc aatttcagca gactgtctgt ataacttggg tctttgttac atggaggaag
361gcaatttaca aatggctttt gattctttta caaaagctgt gaaagcaaat ccagattttg
421cagaaagctt ttatcagcga gggctttgta aagtgaaact ccacaaggat agctcgattc
481tggattttaa tcgtgcaatt accctcaatc caaaacatta ccaggcatat ttaagccgag
541tagcattcta tggtttaaaa ggcaggtatt ccaaagcaat cttgaattgt aacaaggcta
601ttaaaattta ccctgaaagc gtacgtgcct atctctacag aggagttctg aaatactaca
661acaagactta taagctagca attacagatt taactacagc tatcagcatg gacaaaaata
721gttatacagc attttataac agagcattat gttacaccaa gataagggaa cttcaaatgg
781cattaacaga ttatggaatt gtgctgcttc ttgatgctac agaaactgta aaactaaata
841ccttccttaa tcgtggactc atctacgtag aactaggcca gtatggcttt gcactagagg
901attttaaaca agctgcactg ataagccgga ctaacgggag cctttgtcac gccactgcca
961tgtgccatca cagaattaat gagtttgaag aagctgtcaa tttctttact tgggctctta
1021aaattaaccc atgttttctg gatgcttatg ttggacgggg aaattcttac atggaatacg
1081gtcatgatga agccaccaag caagcacaga aagactttct gaaagcactg catattaatc
1141cagcatacat aaaagccaga attagttttg gctataattt gcaggcccaa ggaaaattcc
1201agaaagcttg gaaccacttt accattgcca tagatactga tccaaagaac tacctagcct
1261atgaaggaag agctgtggtc tgtcttcaga tgggtaataa ttttGCTGCA ATGCAGGATA
1321TTAATGCTGC CATGAAGATC AGTACTACAG CAGAATTCTT AACAAATCGT GGGGTGATTC
1381ATGAGTTTAT GGGCCACAAA CAGAATGCAA TGAAAGACTA CCAAGATGCA ATTACTCTAA
1441ACCCCAAGTA CTCGCTGGCT TACTTTAATG CAGGAAATAT CTACTTTCAC CACAGGCAGT
1501TTTCCCAGGA AGAAAGTCTT GGCCTGGCTT GGAGTCTTTC CCTTGACTCA TTTCTGAGAA
1561CTGGGGGTGC AACCTTCTCT TCAGGAGTGA ATCCTCTTCA AACTCTTCAC AGAAGGATGT
1621CAATTCTGTC CCCCCTCCCC CCAACCTGTC CCAGGGATGA GATGGATTTT ACATCTTTGC
1681CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC
1741TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT
1801ATATATCTTG TGGAAAGGAC GAGATAGCAA CATACCAAAA AGTTCTACGC GTTAAGTCga
1861caatcaacct ctggattaca aaatttgtga aagatt

Download FASTA (ORF) (Full)