Construct: ORF TRCN0000477707
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF003032.1_s317c1
- Derived from:
- ccsbBroadEn_13443
- DNA Barcode:
- TCCCCCGGGTTCTTTCCGTTATTG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TXLNGY (246126)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477707
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 246126 | TXLNGY | taxilin gamma pseudogene, Y... | NR_045129.1 | 37.5% | (many diffs) | |
| 2 | human | 246126 | TXLNGY | taxilin gamma pseudogene, Y... | NR_045128.1 | 7.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 462
- ORF length:
- 393
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttGGCACCAT GGAAGAAGCT GGACTTTGTG GGTTAAGAGA GAAAGCAGAT ATGTTGTGTA 121 ACTCTGAATC ACATGATATT CTTCAACATC AAGACTCAAA TTGCAGTGCC ACAAGTAATA 181 AACATTTATT GGAAGATGAA GAAGGCCGTG ACTTTATAAC AAAGAACAGG AGTTGGGTGA 241 GCCCAGTGCA CTGCACACAA GAGTCAAGAA GGGAGCTTCC TGAGCAAGAA GTAGCCCCTC 301 CGTCTGGTCA GCAAGCTTTA CAATGCAACA GGAACAAAGA AAAAGTCTTA GAGAGACAAG 361 GTCTTTCCCT GTCACCCAGG CTGGAGCGCG GTGGTACATT CATGGGTCAT GGCAGCCTTA 421 AACTCCCTGA GCTCGTGATC CTGTCTCTTC AGACTCTAGA GTTGCCAACT TTCTTGTACA 481 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 541 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 601 AGGACGATCC CCCGGGTTCT TTCCGTTATT GACGCGTTAA GTCgacaatc aacctctgga 661 ttacaaaatt tgtgaaagat t