Construct: ORF TRCN0000477716

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004579.1_s317c1
Derived from:
ccsbBroadEn_11211
DNA Barcode:
TACAGATGGAACTAACACCTAAGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UBE3A (7337)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477716
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354546.2 71.9% 71.9% 1_684del
2 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354550.2 70.4% 57.8% (many diffs)
3 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354506.2 68.6% 68.6% 1_801del
4 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354507.2 68.6% 68.6% 1_801del
5 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354508.2 68.6% 68.6% 1_801del
6 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354509.2 68.6% 68.6% 1_801del
7 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354511.2 68.6% 68.6% 1_801del
8 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354512.2 68.6% 68.6% 1_801del
9 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354513.2 68.6% 68.6% 1_801del
10 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354523.2 68.6% 68.6% 1_801del
11 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354526.1 68.6% 68.6% 1_801del
12 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354539.2 68.6% 68.6% 1_801del
13 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354540.2 68.6% 68.6% 1_801del
14 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354541.2 68.6% 68.6% 1_801del
15 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354542.2 68.6% 68.6% 1_801del
16 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354543.2 68.6% 68.6% 1_801del
17 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354544.2 68.6% 68.6% 1_801del
18 human 7337 UBE3A ubiquitin protein ligase E3A NM_001374461.1 68.6% 68.6% 1_801del
19 human 7337 UBE3A ubiquitin protein ligase E3A NM_130838.4 68.6% 68.6% 1_801del
20 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354551.2 68.4% 57.7% (many diffs)
21 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354505.1 67% 67% 1_861del
22 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354538.2 67% 67% 1_861del
23 human 7337 UBE3A ubiquitin protein ligase E3A NM_130839.4 67% 67% 1_861del
24 human 7337 UBE3A ubiquitin protein ligase E3A XM_017022547.2 67% 67% 1_861del
25 human 7337 UBE3A ubiquitin protein ligase E3A XM_017022548.2 67% 67% 1_861del
26 human 7337 UBE3A ubiquitin protein ligase E3A XM_017022550.2 67% 67% 1_861del
27 human 7337 UBE3A ubiquitin protein ligase E3A NM_000462.5 66.8% 66.8% 1_870del
28 human 7337 UBE3A ubiquitin protein ligase E3A XM_011521995.3 66.8% 66.8% 1_870del
29 human 7337 UBE3A ubiquitin protein ligase E3A XM_024450043.1 66.8% 66.8% 1_870del
30 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354547.2 62.5% 62.5% 1_801del;2063_2064ins156
31 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354548.2 62.5% 62.5% 1_801del;2063_2064ins156
32 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354549.2 62.2% 62.2% 1_801del;1899_1900ins165
33 human 7337 UBE3A ubiquitin protein ligase E3A NM_001354545.2 61.1% 61.1% 1_861del;2123_2124ins156
34 human 7337 UBE3A ubiquitin protein ligase E3A XM_017022556.2 60.9% 60.9% 1_870del;2132_2133ins156
35 human 7337 UBE3A ubiquitin protein ligase E3A NR_148916.2 20.4% 1_1377del;2123_2124insGCTA;3129_8540del
36 mouse 22215 Ube3a ubiquitin protein ligase E3A XM_006540803.3 68.1% 70.7% (many diffs)
37 mouse 22215 Ube3a ubiquitin protein ligase E3A NM_001033962.1 64.9% 67.4% (many diffs)
38 mouse 22215 Ube3a ubiquitin protein ligase E3A XM_011250847.2 64.9% 67.4% (many diffs)
39 mouse 22215 Ube3a ubiquitin protein ligase E3A XM_006540800.3 64.2% 66.7% (many diffs)
40 mouse 22215 Ube3a ubiquitin protein ligase E3A XM_006540801.3 64.2% 66.7% (many diffs)
41 mouse 22215 Ube3a ubiquitin protein ligase E3A NM_011668.2 63.4% 65.8% (many diffs)
42 mouse 22215 Ube3a ubiquitin protein ligase E3A XM_006540799.3 63.4% 65.8% (many diffs)
43 mouse 22215 Ube3a ubiquitin protein ligase E3A XM_017322125.1 63.4% 65.8% (many diffs)
44 mouse 22215 Ube3a ubiquitin protein ligase E3A NM_173010.3 55.1% 57.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1821
ORF length:
1755
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgga gaatagaaat ctccacagtc ctgaatatct ggaaatggct ttgccattat
121tttgcaaagc gatgagcaag ctaccccttg cagcccaagg aaaactgatc agactgtggt
181ctaaatacaa tgcagaccag attcggagaa tgatggagac atttcagcaa cttattactt
241ataaagtcat aagcaatgaa tttaacagtc gaaatctagt gaatgatgat gatgccattg
301ttgctgcttc gaagtgcttg aaaatggttt actatgcaaa tgtagtggga ggggaagtgg
361acacaaatca caatgaagaa gatgatgaag agcccatccc tgagtccagc gagctgacac
421ttcaggaact tttgggagaa gaaagaagaa acaagaaagg tcctcgagtg gaccccctgg
481aaactgaact tggtgttaaa accctggatt gtcgaaaacc acttatccct tttgaagagt
541ttattaatga accactgaat gaggttctag aaatggataa agattatact tttttcaaag
601tagaaacaga gaacaaattc tcttttatga catgtccctt tatattgaat gctgtcacaa
661agaatttggg attatattat gacaatagaa ttcgcatgta cagtgaacga agaatcactg
721ttctctacag cttagttcaa ggacagcagt tgaatccata tttgagactc aaagttagac
781gtgaccatat catagatgat gcacttgtcc ggctagagat gatcgctatg gaaaatcctg
841cagacttgaa gaagcagttg tatgtggaat ttgaaggaga acaaggagtt gatgagggag
901gtgtttccaa agaatttttt cagctggttg tggaggaaat cttcaatcca gatattggta
961tgttcacata cgatgaatct acaaaattgt tttggtttaa tccatcttct tttgaaactg
1021agggtcagtt tactctgatt ggcatagtac tgggtctggc tatttacaat aactgtatac
1081tggatgtaca ttttcccatg gttgtctaca ggaagctaat ggggaaaaaa ggaacttttc
1141gtgacttggg agactctcac ccagttctat atcagagttt aaaagattta ttggagtatg
1201aagggaatgt ggaagatgac atgatgatca ctttccagat atcacagaca gatctttttg
1261gtaacccaat gatgtatgat ctaaaggaaa atggtgataa aattccaatt acaaatgaaa
1321acaggaagga atttgtcaat ctttattctg actacattct caataaatca gtagaaaaac
1381agttcaaggc ttttcggaga ggttttcata tggtgaccaa tgaaTCTCCC TTAAAGTACT
1441TATTCAGACC AGAAGAAATT GAATTGCTTA TATGTGGAAG CCGGAATCTA GATTTCCAAG
1501CACTAGAAGA AACTACAGAA TATGACGGTG GCTATACCAG GGACTCTGTT CTGATTAGGG
1561AGTTCTGGGA AATCGTTCAT TCATTTACAG ATGAACAGAA AAGACTCTTC TTGCAGTTTA
1621CAACGGGCAC AGACAGAGCA CCTGTGGGAG GACTAGGAAA ATTAAAGATG ATTATAGCCA
1681AAAATGGCCC AGACACAGAA AGGTTACCTA CATCTCATAC TTGCTTTAAT GTGCTTTTAC
1741TTCCGGAATA CTCAAGCAAA GAAAAACTTA AAGAGAGATT GTTGAAGGCC ATCACGTATG
1801CCAAAGGATT TGGCATGCTG TACCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1861CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1921AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGATACA GATGGAACTA
1981ACACCTAAGA ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)