Construct: ORF TRCN0000477771

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF008467.1_s317c1
Derived from:
ccsbBroadEn_04485
DNA Barcode:
GGACACGGGCGTGCCCGATTCACG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CCDC65 (85478)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000477771
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 85478 CCDC65 coiled-coil domain containi... NM_033124.5 100% 100%
2 human 85478 CCDC65 coiled-coil domain containi... NM_001286957.2 70.4% 70.4% 0_1ins429
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1518
ORF length:
1452
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc taagaaagaa aaaatggcca agacgcccct gtccgatgag aagcagctgc
121ttctgtttca gcagaagttg ctggcagagg aggagatggc caaaaagaag gagaggctcc
181tcagccagtt cttgaaggac aagctggcca aggaggaaca caacagtgct ctgaacctta
241ataagattaa cacacagtgg agaactgtcc ttcgggaagt caagaccaga gaacttcata
301aggacattga gatcctcagc caaacatttg aacgagtggt ggactgtaag gacaatgtca
361tcaagtcttt agctaaagac ctgtccgaag ccgaggagca gtacgcccat gccctgcgca
421gccacttgca caatgttgac cagctcttgg ccctgcagag gcaccggctc agtctcctgg
481aggaaagtta caacatggag ctggaagccc taaccaagga gtttgagaca gaaaggaaga
541caattattga ccaacatgag aaagagattc actatctgca agatatcttc atggccatgg
601agcagaacta tatagattct gagtatgaaa gcaagctgga gttccagagc atgtggaatg
661atctcaaaaa catgaattta gaagagaagc actttctaag actgcacctg gagaacagag
721tagaagatct gtggagaaag ttccaggatg tactcaagaa ttacactgat gccacagagg
781atcgaaaggc tgcctttgag accctgcagg tgaaggatga gaagagctcc aaagagattg
841aagtacagat gaaaaaaata cagaaactac aggatgccat aactatttca aaaggcaaga
901tcatgataca cagccgtgag agtgaagatg agaaccggta tatccgtaat gacaaggaat
961tggtccttgt acaactgcga aaacttaagg cccaaagaac tcaggcccgg gcagcatccc
1021agaagaactt agtcagactc accctggaaa gtaatgccac cctcaaggcc ctgagaaaga
1081ttgttgataa gggtgaaaag atccttaaac ttgctgaaat atgtaggaaa tttgaaaCCG
1141AAGAAGAAAA AGTGCTGCCT TTTTATTCAT CAGTATTGAC TCCTAAGGAG CAGGAGGGGA
1201TTCAGAAGAA TAATCTAGAA GAGCTTACTG AGGAGCTCAC CAAGGTGATG GTGGACTACA
1261TAGGAATGGA GAATTTCTGG AAAAGGTACA ACAAAGTGAA ACTGGAGCAA CTGAGCCTCC
1321AACATAGACG AGCCCAGCTG CTAGATATCA ATGGGAAGCT GCGGGAGATG CTGAAGCAGT
1381ACTTGGATGG CATCTCAGTG AGTGACGAAG TGCTGAGCCA GCTCAACCCA CTCTTTATAG
1441TCAACTATCA AAGCAACTTA CTCCAGCCCT TGTCCATACG TATAGCCCAT CCAGGTGATA
1501AACAACATCC AACCACTTAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1561TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1621GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAGGACACG GGCGTGCCCG
1681ATTCACGACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)