Construct: ORF TRCN0000477849
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017959.1_s317c1
- Derived from:
- ccsbBroadEn_11635
- DNA Barcode:
- CAGGACGTTATTTGAGACCTGTGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANKRD26 (22852)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000477849
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 22852 | ANKRD26 | ankyrin repeat domain 26 | NM_014915.2 | 95.3% | 95.3% | 737_738ins147;1363_1461del |
| 2 | human | 22852 | ANKRD26 | ankyrin repeat domain 26 | NM_001256053.1 | 95.2% | 95.2% | 737_738ins147;1363_1461del;1811_1812insTAG |
| 3 | human | 22852 | ANKRD26 | ankyrin repeat domain 26 | XM_006717423.2 | 79% | 79% | 737_738ins147;1363_1461del;1634_2719del |
| 4 | human | 22852 | ANKRD26 | ankyrin repeat domain 26 | XM_011519416.2 | 77.4% | 76.7% | (many diffs) |
| 5 | human | 22852 | ANKRD26 | ankyrin repeat domain 26 | XM_017015930.1 | 77.4% | 76.7% | (many diffs) |
| 6 | human | 22852 | ANKRD26 | ankyrin repeat domain 26 | XM_017015931.1 | 77.4% | 76.7% | (many diffs) |
| 7 | human | 22852 | ANKRD26 | ankyrin repeat domain 26 | XM_006717425.4 | 77% | 76.9% | (many diffs) |
| 8 | human | 22852 | ANKRD26 | ankyrin repeat domain 26 | XM_017015932.1 | 77% | 76.9% | (many diffs) |
| 9 | human | 22852 | ANKRD26 | ankyrin repeat domain 26 | XM_017015929.1 | 76.7% | 76.2% | (many diffs) |
| 10 | human | 22852 | ANKRD26 | ankyrin repeat domain 26 | XM_017015928.1 | 76.6% | 76% | (many diffs) |
| 11 | human | 22852 | ANKRD26 | ankyrin repeat domain 26 | XM_017015933.1 | 58.9% | 58.3% | (many diffs) |
| 12 | human | 22852 | ANKRD26 | ankyrin repeat domain 26 | XM_024447896.1 | 46.8% | 29.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 5247
- ORF length:
- 5178
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gaagaagatt tttagtaaga agggcgagtc gcccttgggc tccttcgcgc 121 ggcggcagag gagcagcgcg ggaggcgggg gcgagccggg ggagggcgcc tactcgcagc 181 ccggctacca cgtccgagac cgagatctcg gcaagatcca caaagctgcc agcgcgggta 241 atgtggcgaa agtgcagcag atccttttgc tcaggaagaa tggcttgaac gatagagaca 301 agatgaacag gacggctcta catttggcct gtgccaatgg tcatccagaa gtagtaactc 361 tcctggtgga cagaaaatgc cagctcaatg tctgtgacaa cgaaaacagg acagctctga 421 tgaaggctgt acaatgccag gaagagaaat gtgcaactat tctgctagaa catggtgctg 481 atccaaatct tgcggatgtc catggcaaca ctgctcttca ctatgctgtc tataatgagg 541 acatatcagt agcaacaaag ctgcttttgt atgatgcaaa tattgaagca aaaaacaagg 601 atgacctcac accactttta cttgcagtaa gtggaaaaaa gcagcaaatg gtggaatttt 661 taataaagaa aaaagcaaat gtaaatgcag tagataagtt ggaaagcagt caccaactaa 721 tttcagaata taaagaagaa aggataccta aacattcttc tcaaaatagt aattcagtgg 781 atgaaagctc tgaagactcc ttaagcagtt tattttattt tatttttttt gaggcaaagt 841 cttgcactgt tgcccaggct ggagtgctac agcatgatct cggctcactg caatctctgc 901 ttcctgggtt cacacaattc ttctgcctcc acctcccaag tagctgggac cacaggcttt 961 ctggcaaacc gggtgttgat gattcatggc ctacctcaga tgacgaagac ctcaattttg 1021 atactaagaa tgtcccaaaa ccaagcttag caaagctaat gactgcttct cagcaatcca 1081 ggaaaaattt agaagcaaca tatggcactg tgagaacagg aaatagaact ttgtttgagg 1141 atagagattc cgatagtcaa gatgaagttg tggttgaaag ccttcctaca acatcaatca 1201 aagtccagtg cttttctcat cctacctatc aatcacctga ccttcttcca aaaccttccc 1261 acaagtcgtt agcaaaccct ggtcttatga aggaagaacc aacaaagcca ggcattgcaa 1321 aaaaagaaaa tggtattgat attattgaaa gtgctccact agagcaaaca aataatgaca 1381 atttgactta tgttgatgaa gtgcacaaaa ataatagaag tgatatgatg tccgcattag 1441 gattaggaca agaggaagat atagaatcac cttgggattc tgagagtatc tctgagaatt 1501 ttccacagaa gtatgttgat cctttagctg gggctgcaga cggaaaagaa aaaaatatag 1561 gaaatgaaca agcagaagag tctcctgaga gatatcttca cttgaagcct accattgaaa 1621 tgaaagattc tgttccaaat aaagcaggag gaatgaagga tgtacaaaca tccaaagcag 1681 ctgaacatga cttagaagta gcatcagaag aagagcaaga aagggaaggg agtgaaaata 1741 accagccaca ggttgaagaa gaaaggaaaa aacacagaaa taatgaaatg gaagtatcag 1801 caaacataca tgatggtgct actgatgatg ctgaagatga tgatgatgat gatggattaa 1861 ttcaaaaaag aaagagtgga gaaactgatc atcagcaatt tcccaggaag gaaaataaag 1921 agtatgctag tagtggtcct gccttgcaaa tgaaggaagt aaagagcact gaaaaagaaa 1981 aacggacctc gaaagaatct gtgaattcac cagtgtttgg gaaggccagt ttactaactg 2041 gtggcctgct acaagtggat gatgacagca gtttaagtga aatagatgag gatgaaggaa 2101 ggcctactaa gaaaacatct aatgaaaaga acaaggtcaa aaaccaaata cagtctatgg 2161 atgatgttga tgacttaact cagtcatctg aaacagcctc agaggattgt gagctacccc 2221 actctagtta caagaatttt atgttgctca ttgaacaact tggaatggag tgtaaagatt 2281 ctgttagcct attgaaaatc caggatgcag ctctttcatg tgaaagatta ttagaactta 2341 aaaaaaatca ctgtgaacta cttacagtaa aaattaaaaa aatggaagac aaggttaatg 2401 tactacaaag ggagctatct gaaacaaaag aaataaaatc acagttagag catcaaaaag 2461 ttgaatggga acgagaactg tgctctttga gatttagctt aaaccaagaa gaagagaaga 2521 gaagaaatgc tgatacgttg tatgaaaaaa ttagggaaca gttaagaaga aaagaagagc 2581 aatataggaa agaagttgaa gtgaaacaac agcttgaact gagtctccaa acactggaga 2641 tggaattgag gactgtaaaa agtaatttga atcaggtcgt tcaagagcga aatgacgctc 2701 agaggcaact ttctcgagaa cagaatgcca gaatgttaca agatggaatt ctgaccaatc 2761 acctttccaa acaaaaggag attgaaatgg ctcaaaagaa aatgaattct gagaattctc 2821 atagtcatga agaagaaaaa gacctatcgc ataaaaatag catgttgcag gaagaaattg 2881 ctatgctaag actagaaata gacacaataa aaaatcaaaa ccaggaaaaa gaaaagaaat 2941 gttttgagga ccttaaaatt gtaaaagaaa agaatgaaga ccttcagaag actataaaac 3001 agaatgagga aacattaaca caaacaatat cccagtataa tggacggctt agtgttctga 3061 cagctgagaa tgcaatgcta aattctaaac tggagaatga aaagcaaagc aaggaaagac 3121 tggaagcaga agttgaatca taccattcta gattggctgc tgctatacat gatcgtgatc 3181 aaagtgagac atcaaaaaga gaactagaac ttgctttcca gagagcaaga gatgaatgtt 3241 ctcgtttaca ggacaaaatg aattttgatg tgtctaacct aaaagataac aatgagattc 3301 tttctcaaca actatttaaa actgaaagta aactcaatag cctagaaatt gagttccatc 3361 acacgagaga tgccctcaga gaaaagactt tgggtttaga acgggtacaa aaggacctaa 3421 gccaaacaca gtgtcaaatg aaggaaatgg aacaaaagta tcaaaatgaa caagttaaag 3481 tgaataaata cattggaaag caggagtctg tagaggagag attgtctcaa ctacaaagtg 3541 agaatatgtt gcttcgacaa caactggatg atgcccacaa caaggctgac aataaagaga 3601 agacagtgat taatatccaa gaccagtttc atgctattgt gcaaaaactt caagctgaga 3661 gtgaaaagca aagtcttctg ctagaagaaa gaaataagga gttaatcagt gaatgtaatc 3721 acttaaaaga aagacagtat caatatgaaa atgaaaaggc agaaagagaa gttgttgtga 3781 gacaacttca acaagaacta gctgataccc taaaaaaaca atctatgtca gaggcttcac 3841 tggaggttac gtcacgttat cgtattaatt tagaagatga gacacaggat ttaaagaaga 3901 aattaggtca aatcagaaat caattgcaag aagcacagga tcgacataca gaagctgtca 3961 gatgtgctga gaagatgcaa gatcacaagc aaaagcttga aaaagataat gccaagttaa 4021 aagttacagt caaaaagcaa atggacaaaa ttgaggagct tcagaaaaac ctgttaaatg 4081 caaatttgtc tgaagatgaa aaggaacaat taaagaaact tatggaatta aaacagtcac 4141 tggaatgtaa tttggatcaa gaaatgaaga aaaatgttga attagaaaga gagataactg 4201 gatttaagaa cctcttaaaa atgacaagaa agaagttaaa tgaatatgaa aatggagaat 4261 ttagtttcca tggagattta aaaactagtc aatttgaaat ggatattcag attaataagc 4321 taaaacataa gattgatgat cttacagcag aactggagac tgcaggttca aaatgtctac 4381 atctggatac aaagaaccaa attcttcaag aggagttgtt atctatgaaa acagtacaaa 4441 agaaatgtga aaaactacag aagaataaaa agaagttgga acaagaagtg atcaacctga 4501 gaagtcatat agaaaggaat atggtagaac ttggtcaagt caaacagtat aaacaggaga 4561 ttgaagaaag agcaagacag gaaatagcag aaaaattaaa agaagtcaat ctatttttac 4621 aggcacaagc agcatctcaa gaaaacttag agcagtttag agagaataat tttgcttcaa 4681 tgaaaagtca gatggaactc agaattaaag atctggaaTC TGAACTCTCC AAAATAAAAA 4741 CTTCTCAAGA AGACTTTAAT AAAACCGAAC TGGAAAAATA TAAGCAACTC TATCTAGAAG 4801 AATTAAAAGT TAGAAAATCT TTGTCAAGTA AACTAACCAA AACTAATGAG AGGCTAGCAG 4861 AGGTCAACAC CAAACTTCTT GTGGAAAAAC AGCAGAGCAG ATCTTTGTTC ACCACTCTCA 4921 CTACCAGGCC AGTCATGGAG CCACCTTGTG TGGGAAATCT TAATAATAGT TTAGATCTCA 4981 ACAGAAAACT TATTCCAAGA GAAAACTTAG TGATCTCTAC CTCAAATCCA CGGGCTTCAA 5041 ATAATAGCAT GGAGAACTAC TTGAGCAAGA TGCAGCAGGA GTTGGAAAAA AATATAACTA 5101 GAGAACTCAA AGAAGCTGCT GCTGAATTGG AATCTGGATC AATAGCTTCC CCTCTAGGGT 5161 CTACTGATGA GTCAAATCTA AATCAAGATC TAGTTTGGAA AGCATCAAGA GAATATGTAC 5221 AGGTTTTAAA GAAAAATTAT ATGATCTTGC CAACTTTCTT GTACAAAGTG GTTGATATCG 5281 GTAAGCCTAT CCCTAACCCT CTCCTCGGTC TCGATTCTAC GTAGTAATGA ACTAGTCCGT 5341 AACTTGAAAG TATTTCGATT TCTTGGCTTT ATATATCTTG TGGAAAGGAC GACAGGACGT 5401 TATTTGAGAC CTGTGTACGC GTTAAGTCga caatcaacct ctggattaca aaatttgtga 5461 aagatt