Construct: ORF TRCN0000478060
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010698.1_s317c1
- Derived from:
- ccsbBroadEn_10641
- DNA Barcode:
- GCGACCCTATGTTCGGTCACCTCG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- BAIAP2-DT (440465)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478060
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 440465 | BAIAP2-DT | BAIAP2 divergent transcript | NR_026857.1 | 12.4% | 1_2081del;2634_4421del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 621
- ORF length:
- 552
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gcctgtcaag ggagcttcct ctctcctctt cctccccctc ccaccttctg 121 cctggcagct ttgccttctc tccaagagaa gggtccaccc aatcagaact cctcttcctt 181 ttcattcctg gattaaagca cttgtaaTCA GTAACCAGAA AGTTCCAGAG CGGGAGAGAC 241 CGGAAGGCAC TGGAGTGCTA TCGGACGGGT GTCTGGGGCA GAGCCAGGAG GGCGAGCCTC 301 TTCTCTCCCC GCCTGCCCTT GCTCACTTCC CCCTCCATGC CAGGTGCTGT GGGAGCAGCT 361 GGGCCTGGCC GGGGTCGGCG GGTGAAGCTA TCCGCATGGT GTCTGGAGCA CCGTTTCTTT 421 GCTTCCTGGA TGGGCTGGAT GGGCTCCCGT GTTCTTCACC AATGGCAGCG TTACCAGCAC 481 CAATGGCAGC GTTACCAGCA AGAAGGCAAA GGCAGGAGCA CATCGAGGGT GGGAGCCAGG 541 GCTGTGGGGT CAGGAGTCCC GCTCCTTGCC GCGGGAAGCC TGGCTCAGCC ACCTCCAGCA 601 CACTTCGGCT TTGTCCAGCA TTGCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC 661 CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG 721 AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGAGCGA CCCTATGTTC 781 GGTCACCTCG ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt