Construct: ORF TRCN0000478196

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011220.1_s317c1
Derived from:
ccsbBroadEn_10834
DNA Barcode:
AGCATTCCAACAGCCTCCTAAAAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GABRR1 (2569)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478196
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 2569 GABRR1 gamma-aminobutyric acid typ... NM_002042.5 98.4% 98.5% (many diffs)
2 human 2569 GABRR1 gamma-aminobutyric acid typ... NM_001256703.1 94.8% 95% (many diffs)
3 human 2569 GABRR1 gamma-aminobutyric acid typ... NM_001256704.1 82.5% 82.7% 0_1ins246;177C>T;924G>A
4 human 2569 GABRR1 gamma-aminobutyric acid typ... NM_001267582.1 82.5% 82.7% 0_1ins246;177C>T;924G>A
5 human 2569 GABRR1 gamma-aminobutyric acid typ... XM_017010689.1 82.5% 82.7% 0_1ins246;177C>T;924G>A
6 mouse 14408 Gabrr1 gamma-aminobutyric acid (GA... NM_008075.2 86.5% 93.1% (many diffs)
7 mouse 14408 Gabrr1 gamma-aminobutyric acid (GA... XM_006537613.3 80.8% 82.9% (many diffs)
8 mouse 14408 Gabrr1 gamma-aminobutyric acid (GA... XM_006537612.1 80.4% 82% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1491
ORF length:
1422
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gagatttggc atctttcttt tgtggtgggg atgggttttg gccactgaaa
121gcagaatgca ctggcccgga agagaagtcc acgagatgtc taagaaaggc agtaggcccc
181aaagacaaag acgagaagta catgaagatg cccacaagca agtcagccca attctgagac
241gaagtcctga catcaccaaa tcgcctctga caaagtcaga acagcttctg aggatagatg
301accatgattt cagcatgagg cctggctttg gaggccctgc cattcctgtt ggtgtggatg
361tgcaggtgga gagtttggat agcatctcag aggttgacat ggactttacg atgaccctct
421acctgaggca ctactggaag gacgagaggc tgtcttttcc aagcaccaac aacctcagca
481tgacgtttga tggccggctg gtcaagaaga tctgggtccc tgacatgttt ttcgtgcact
541ccaaacgctc cttcatccac gacaccacca cagacaacgt catgttgcgg gtccagcctg
601atgggaaagt gctctatagt ctcagggtta cagtaactgc aatgtgcaac atggacttca
661gccgatttcc cttggacaca caaacgtgct ctcttgaaat tgaaagctat gcctatacag
721aagatgacct catgctgtac tggaaaaagg gcaatgactc cttaaagaca gatgaacgga
781tctcactctc ccagttcctc attcaggaat tccacaccac caccaaactg gctttctaca
841gcagcacagg ctggtacaac cgtctctaca ttaatttcac gttgcgtcgc cacatcttct
901tcttcttgct ccaaacttat ttccccgcta ccctgatggt catgctgtcc tgggtgtcct
961tctggatcga ccgcagagcc gtgcctgcca gagtcccctt aggtatcaca acggtgctga
1021ccatgtccac catcatcacg ggcgtgaatg cctccatgcc gcgcgtctcc tacatcaagg
1081ccgtggacat ctacctctgg gtcagctttg tgttcgtgtt cctctcggtg ctggagtatg
1141cggccgtcaa ctacctgacc actgtgcagg agaggaagga acagaagctg cgggagaagc
1201ttccctgcac cagcggatta ccTCCGCCCC GCACTGCAAT GCTGGACGGC AACTACAGTG
1261ATGGGGAGGT GAATGACCTG GACAACTACA TGCCAGAGAA TGGAGAGAAG CCCGACAGGA
1321TGATGGTGCA GCTGACCCTG GCCTCAGAGA GGAGCTCCCC ACAGAGGAAA AGTCAGAGAA
1381GCAGCTATGT GAGCATGAGA ATCGACACCC ACGCCATTGA TAAATACTCC AGGATCATCT
1441TTCCAGCAGC ATACATTTTA TTCAATTTAA TATACTGGTC TATTTTCTCC TTGCCAACTT
1501TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
1561CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
1621CTTGTGGAAA GGACGAAGCA TTCCAACAGC CTCCTAAAAT ACGCGTTAAG TCgacaatca
1681acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)