Transcript: Mouse XM_006537612.1

PREDICTED: Mus musculus gamma-aminobutyric acid (GABA) C receptor, subunit rho 1 (Gabrr1), transcript variant X1, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gabrr1 (14408)
Length:
2252
CDS:
124..1548

Additional Resources:

NCBI RefSeq record:
XM_006537612.1
NBCI Gene record:
Gabrr1 (14408)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006537612.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000434494 ACACTCACGCCATTGATAAAT pLKO_005 1460 CDS 100% 15.000 21.000 N Gabrr1 n/a
2 TRCN0000419304 CTTTGATGGCCGACTTGTAAA pLKO_005 540 CDS 100% 13.200 18.480 N Gabrr1 n/a
3 TRCN0000102948 CTGAGGATAGACGACCATGAT pLKO.1 343 CDS 100% 4.950 6.930 N Gabrr1 n/a
4 TRCN0000102945 GCCATGATAGTACCTGACATT pLKO.1 1744 3UTR 100% 4.950 6.930 N Gabrr1 n/a
5 TRCN0000102946 GACGCTATATTTGAGGCACTA pLKO.1 468 CDS 100% 4.050 5.670 N Gabrr1 n/a
6 TRCN0000102947 CAATCTGATATACTGGTCAAT pLKO.1 1518 CDS 100% 4.950 3.960 N Gabrr1 n/a
7 TRCN0000102949 GCGTCGTCACATCTTCTTCTT pLKO.1 939 CDS 100% 4.950 2.475 Y Gabrr1 n/a
8 TRCN0000048666 GACTCCTTAAAGACAGATGAA pLKO.1 811 CDS 100% 4.950 3.465 N GABRR1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006537612.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_10834 pDONR223 100% 80.4% 82% None (many diffs) n/a
2 ccsbBroad304_10834 pLX_304 0% 80.4% 82% V5 (many diffs) n/a
3 TRCN0000478196 AGCATTCCAACAGCCTCCTAAAAT pLX_317 19.3% 80.4% 82% V5 (many diffs) n/a
4 TRCN0000489097 CTGTGGAAGGAACAAATTACATTC pLX_317 19.2% 79.6% 80.7% V5 (not translated due to prior stop codon) (many diffs) n/a
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