Construct: ORF TRCN0000478200
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015377.1_s317c1
- Derived from:
- ccsbBroadEn_12597
- DNA Barcode:
- GCAACGCTATAACCCCTGCGCACA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- OGFOD3 (79701)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478200
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79701 | OGFOD3 | 2-oxoglutarate and iron dep... | NM_024648.3 | 16.7% | 14.7% | (many diffs) |
| 2 | human | 79701 | OGFOD3 | 2-oxoglutarate and iron dep... | XR_933942.3 | 7.5% | (many diffs) | |
| 3 | human | 79701 | OGFOD3 | 2-oxoglutarate and iron dep... | XR_430034.4 | 7.5% | (many diffs) | |
| 4 | human | 79701 | OGFOD3 | 2-oxoglutarate and iron dep... | XR_001752626.2 | 7.4% | (many diffs) | |
| 5 | human | 79701 | OGFOD3 | 2-oxoglutarate and iron dep... | XR_002958069.1 | 6.3% | (many diffs) | |
| 6 | human | 79701 | OGFOD3 | 2-oxoglutarate and iron dep... | NR_033265.2 | 3.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 255
- ORF length:
- 165
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGGCCACCTC TCTCTCTTCT CCTCTCCCAG 121 GTCGCGTCTC CTTCTTCACC TCGGGGTCCG AGAACCTACA CCGCGTGGAG AAGGTCCACT 181 GGGGCACCCG TTACGCCATT ACCATCGCCT TCAGCTGCAA CCCCGACCAT GGCATCGAGG 241 ACCCAGCGTT CCCGTACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC 301 CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA 361 TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA GCAACGCTAT AACCCCTGCG 421 CACAACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt