Construct: ORF TRCN0000478223
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF004583.1_s317c1
- Derived from:
- ccsbBroadEn_11133
- DNA Barcode:
- ACAGCACGATATGCGTTTTTCCGG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLAMF1 (6504)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478223
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6504 | SLAMF1 | signaling lymphocytic activ... | XM_005245456.4 | 46% | 41.1% | (many diffs) |
| 2 | human | 6504 | SLAMF1 | signaling lymphocytic activ... | NM_003037.4 | 41.9% | 37.5% | (many diffs) |
| 3 | human | 6504 | SLAMF1 | signaling lymphocytic activ... | XM_017002130.2 | 41.5% | 37.1% | (many diffs) |
| 4 | human | 6504 | SLAMF1 | signaling lymphocytic activ... | NM_001330754.1 | 39.3% | 35.1% | (many diffs) |
| 5 | human | 6504 | SLAMF1 | signaling lymphocytic activ... | NR_104400.3 | 11.7% | (many diffs) | |
| 6 | human | 6504 | SLAMF1 | signaling lymphocytic activ... | NR_104399.3 | 11.4% | (many diffs) | |
| 7 | human | 6504 | SLAMF1 | signaling lymphocytic activ... | NR_104401.3 | 11.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 498
- ORF length:
- 432
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga tcccaagggg ctcctctcct tgaccttcgt gctgtttctc tccctggctt 121 ttggggcaag ctacggaaca ggtgggcgca tgatgaactg cccaaagatt ctccggcagt 181 tgggaagcaa agtgctgctg cccctgacat atgaaaggat aaataagagc atgaacaaaa 241 gcatccacat tGTCGTCACA ATGGCAAAAT CACTGGAGAA CAGTGTCGAG AACAAAATAG 301 TGTCTCTTGA TCCATCCGAA GCAGGCCCTC CACGTTATCT AGGAGATCGC TACAAGTTTT 361 ATCTGGAGAA TCTCACCCTG GGGATACGGG AAAGCAGGAA GGAGGATGAG GGATGGTACC 421 TTATGACCCT GGAGAAAAGT TTACATTTTG GCTATCTTTA CTTTGTTCTG GGAGCTGATC 481 ATGATAACCT GCAGACCTGC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 541 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 601 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAACAGCAC GATATGCGTT 661 TTTCCGGACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt