Transcript: Human NR_104399.3

Homo sapiens signaling lymphocytic activation molecule family member 1 (SLAMF1), transcript variant 2, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
SLAMF1 (6504)
Length:
3675
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_104399.3
NBCI Gene record:
SLAMF1 (6504)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_104399.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000061673 CCTCCACGTTATCTAGGAGAT pLKO.1 361 3UTR 100% 4.050 5.670 N SLAMF1 n/a
2 TRCN0000373540 ACCCTTGCACCACCATATATG pLKO_005 927 3UTR 100% 13.200 10.560 N SLAMF1 n/a
3 TRCN0000061675 GATTCTCATCATGGTGGTAAT pLKO.1 849 3UTR 100% 10.800 7.560 N SLAMF1 n/a
4 TRCN0000061674 CCACTCCAGAAATTAAAGTTT pLKO.1 524 3UTR 100% 5.625 3.938 N SLAMF1 n/a
5 TRCN0000061677 CAGCAACAATTCCCAGACCTT pLKO.1 744 3UTR 100% 2.640 1.848 N SLAMF1 n/a
6 TRCN0000373609 CTTGGCTGGAACTGGATAATA pLKO_005 1348 3UTR 100% 15.000 9.000 N SLAMF1 n/a
7 TRCN0000373541 TGCCTGCAGTTGAGGCTTTAT pLKO_005 493 3UTR 100% 13.200 7.920 N SLAMF1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_104399.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_01539 pDONR223 100% 24.8% None 1_99del;889_890ins74;1031_3675del n/a
2 ccsbBroad304_01539 pLX_304 0% 24.8% V5 1_99del;889_890ins74;1031_3675del n/a
3 TRCN0000480220 ACGTAATAGCCACAGACAGCGTCC pLX_317 28.3% 24.8% V5 1_99del;889_890ins74;1031_3675del n/a
4 ccsbBroadEn_15591 pDONR223 0% 11.6% None (many diffs) n/a
5 ccsbBroad304_15591 pLX_304 0% 11.6% V5 (many diffs) n/a
6 TRCN0000465797 TGTGGACAGGTCCTGGGGGCTTTC pLX_317 53% 11.6% V5 (many diffs) n/a
7 ccsbBroadEn_11133 pDONR223 100% 11.4% None (many diffs) n/a
8 ccsbBroad304_11133 pLX_304 0% 11.4% V5 (many diffs) n/a
9 TRCN0000478223 ACAGCACGATATGCGTTTTTCCGG pLX_317 56.8% 11.4% V5 (many diffs) n/a
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