Construct: ORF TRCN0000478252

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007689.1_s317c1
Derived from:
ccsbBroadEn_04300
DNA Barcode:
GCTGCGATGTTCCCGTAGCAGGTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RSPH3 (83861)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478252
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 83861 RSPH3 radial spoke head 3 NM_031924.6 100% 100%
2 human 83861 RSPH3 radial spoke head 3 NM_001346418.1 82.8% 82.8% 629_630ins288
3 human 83861 RSPH3 radial spoke head 3 XR_001743668.2 72.6% 1_450del;2131_2314del
4 human 83861 RSPH3 radial spoke head 3 XM_017011347.2 51.4% 51.4% 0_1ins816
5 human 83861 RSPH3 radial spoke head 3 XM_024446566.1 51.4% 51.4% 0_1ins816
6 human 83861 RSPH3 radial spoke head 3 XR_001743669.2 51% 1_450del;2131_3293del
7 human 83861 RSPH3 radial spoke head 3 NR_144434.1 26.9% 1_211del;1892_6237del
8 human 83861 RSPH3 radial spoke head 3 XR_001743671.2 22.2% 0_1ins202;427_428ins142;1337_5672del
9 human 83861 RSPH3 radial spoke head 3 XR_001743670.2 21.5% 1_450del;1079_1080ins288;1843_6178del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1746
ORF length:
1680
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgac ggtcaagcca gccaaggccg cctccctagc caggaacctc gcaaagcgca
121ggcgcaccta cctgggtggc gcggctgggc ggagtcaaga gccggaagtc ccttgtgccg
181cagtccttcc cgggaaacct ggggaccgga actgcccgga gttcccgccc ccagacagaa
241ccctgggttg ctgggcaacc gatgcggccc ccgcagctgg tctctgtggt gctgggagcg
301agcccagtat agctcccacc tcctgcgctg gtaacctccc gtcccgcccg cctcccttgt
361tgtcgcctct cctcgcgtcg cggaatcctt gcccttggca ctacttacat ctctccgggt
421cccacaacac cttagcgccc acctgcttca aagccaagct ccaccgaaag cgaggcagtc
481agcccccgga catggcctca gcgctgactg atcgcacctc tcgggccccg agcacctaca
541cctacaccag ccggccccga gcactgccct gccagcgcag ccgttaccgg gacagcctga
601cgcagccaga tgaagaacct atgcattatg gaaacataat gtatgacaga agggtaattc
661gaggtaacac ttatgcactc cagacagggc cactgctcgg acggcctgat tctctagagc
721tccagagaca acgggaggct aggaagaggg ctcttgccag aaaacaagcc caagagcagc
781tcagaccaca aacacctgaa cctgtggaag gcagaaagca tgtcgatgtg caaacagaat
841tataccttga agaaattgct gatcgcataa tagaagttga tatggaatgc caaacagatg
901catttttgga cagaccacca acaccactct ttattcctgc caaaactggc aaagatgtgg
961ccacccaaat actagaagga gagctctttg actttgatct tgaagttaaa ccagtgttag
1021aagttttggt ggggaagaca attgagcagt ctcttctgga agtaatggaa gaagaagagc
1081tggctaacct gcgggccagt cagcgtgagt atgaagaact acggaatagt gaacgtgctg
1141aagttcaacg acttgaagag caagagaggc gacaccgaga agaaaaagaa cggcgtaaga
1201aacagcagtg ggaaataatg cacaagcaca acgagacatc acaaaaaatc gccgcccgag
1261catttgcaca gcgttacctg gctgaccttc tcccgtctgt ttttggcagc ctcagggata
1321gtggctactt ttatgatccc attgaaagag atattgagat aggatttctt ccatggctaa
1381tgaatgaagt tGAAAAAACC ATGGAATATA GCATGGTGGG AAGAACAGTG CTTGACATGT
1441TGATCCGTGA GGTGGTTGAA AAGAGGCTGT GTATGTATGA GCATGGGGAA GACACACATC
1501AGTCTCCAGA ACCCGAGGAT GAGCCTGGTG GTCCTGGAGC AATGACAGAG TCACTGGAGG
1561CCTCTGAATT CCTGGAGCAG AGCATGTCAC AGACACGGGA GCTGCTTTTA GATGGAGGCT
1621ACCTACAAAG AACAACATAT GACAGAAGGT CATCCCAGGA AAGGAAGTTT ATGGAAGAGA
1681GAGAACTCTT AGGGCAAGAT GAAGAAACAG CAATGAGGAA GTCCTTAGGG GAGGAAGAAT
1741TGTCATACCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC
1801TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT
1861CTTGGCTTTA TATATCTTGT GGAAAGGACG AGCTGCGATG TTCCCGTAGC AGGTGACGCG
1921TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt

Download FASTA (ORF) (Full)