Construct: ORF TRCN0000478337
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006077.1_s317c1
- Derived from:
- ccsbBroadEn_02758
- DNA Barcode:
- GCGGGATGTCCACCTATTATAATA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZDHHC17 (23390)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478337
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 23390 | ZDHHC17 | zinc finger DHHC-type conta... | NM_015336.3 | 100% | 100% | |
| 2 | human | 23390 | ZDHHC17 | zinc finger DHHC-type conta... | NM_001359626.1 | 98.4% | 98.4% | 0_1ins30 |
| 3 | mouse | 320150 | Zdhhc17 | zinc finger, DHHC domain co... | NM_172554.2 | 92.2% | 98.5% | (many diffs) |
| 4 | mouse | 320150 | Zdhhc17 | zinc finger, DHHC domain co... | XM_006513761.1 | 54.5% | 58.7% | (many diffs) |
| 5 | mouse | 320150 | Zdhhc17 | zinc finger, DHHC domain co... | XM_006513762.2 | 52% | 56.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1962
- ORF length:
- 1896
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgca gcgggaggag ggatttaaca ccaagatggc ggacggcccg gatgagtacg 121 ataccgaagc gggctgtgtg ccccttctcc acccagagga aatcaaaccc caaagccatt 181 ataaccatgg atatggtgaa cctcttggac ggaaaactca tattgatgat tacagcacat 241 gggacatagt caaggctaca caatatggaa tatatgaacg ctgtcgagaa ttggtggaag 301 caggttatga tgtacggcaa ccggacaaag aaaatgttac cctcctccat tgggctgcca 361 tcaataacag aatagattta gtcaaatact atatttcgaa aggtgctatt gtggatcaac 421 ttggagggga cctgaattca actccattgc actgggccac aagacaaggc catctatcca 481 tggttgtgca actaatgaaa tatggtgcag atccttcatt aattgatgga gaaggatgta 541 gctgtattca tctggctgct cagttcggac atacctcaat tgttgcttat ctcatagcaa 601 aaggacagga tgtagatatg atggatcaga atggaatgac gcctttaatg tgggcagcat 661 atagaacaca tagtgtggat ccaactagat tgcttttaac attcaatgtt tcagttaacc 721 ttggtgacaa gtatcacaaa aacactgctc tgcattgggc agtgctagca gggaatacca 781 cagtcattag ccttcttctg gaagctggag ctaatgttga tgcccagaat atcaagggcg 841 aatcagcgct tgatttggca aaacagagaa aaaatgtgtg gatgatcaac cacttacaag 901 aggcaaggca agcaaaagga tatgacaatc cgtccttcct tagaaagctg aaagctgata 961 aggaatttcg gcagaaagta atgttaggaa ctcctttcct agttatttgg ctggttgggt 1021 ttatagcaga cctaaatatt gattcttggc tcattaaagg gctaatgtat ggtggtgttt 1081 gggctacagt acagtttctt tcaaaatcct ttttcgatca ttcaatgcat agtgcattgc 1141 cccttgggat atatttggca accaaattct ggatgtatgt gacgtggttc ttctggtttt 1201 ggaatgatct caacttttta tttatccatc ttccattcct tgccaatagt gttgcacttt 1261 tctacaattt tggaaaatct tggaaatcag atccagggat tattaaagca acagaagagc 1321 aaaagaaaaa gacaatagtt gaacttgcag agacaggaag tctggacctc agtatattct 1381 gcagtacctg tttgatacga aaaccggtga ggtccaaaca ttgtggtgtg tgcaaccgct 1441 gtatagcaaa atttgatcat cattgcccat gggtgggtaa ctgtgtaggt gcaggcaacc 1501 atagatattt tatgggctac ctattcttct tgctttttat gatctgctgg atgatttatg 1561 gttgtatatc ttactgggga ctccactgtg agaccactta caccaaggat ggattttgga 1621 catacattac tcagattgcc acgtgttcac cttGGATGTT TTGGATGTTC CTGAACAGTG 1681 TTTTCCACTT CATGTGGGTG GCTGTATTAC TCATGTGTCA GATGTACCAG ATATCATGTT 1741 TAGGTATTAC TACAAATGAA AGAATGAATG CCAGGAGATA CAAGCACTTT AAAGTCACAA 1801 CAACGTCTAT TGAAAGCCCA TTCAACCATG GATGTGTAAG AAATATTATA GACTTCTTTG 1861 AATTTCGATG CTGTGGCCTC TTTCGTCCTG TTATCGTGGA CTGGACCAGG CAGTATACAA 1921 TAGAATATGA CCAAATATCA GGATCTGGGT ACCAGCTGGT GTACCCAACT TTCTTGTACA 1981 AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT 2041 AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA 2101 AGGACGAGCG GGATGTCCAC CTATTATAAT AACGCGTTAA GTCgacaatc aacctctgga 2161 ttacaaaatt tgtgaaagat t