Construct: ORF TRCN0000478372
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009791.1_s317c1
- Derived from:
- ccsbBroadEn_02194
- DNA Barcode:
- TCAGTGTATGGAGTGATTCGCTGT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CXCL14 (9547)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478372
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9547 | CXCL14 | C-X-C motif chemokine ligan... | NM_004887.5 | 89.1% | 89.1% | 0_1ins36 |
| 2 | mouse | 57266 | Cxcl14 | chemokine (C-X-C motif) lig... | NM_019568.2 | 84% | 84.6% | (many diffs) |
| 3 | mouse | 57266 | Cxcl14 | chemokine (C-X-C motif) lig... | XM_006517308.3 | 84% | 84.6% | (many diffs) |
| 4 | mouse | 57266 | Cxcl14 | chemokine (C-X-C motif) lig... | XM_006517307.3 | 43.7% | 43.3% | (many diffs) |
| 5 | mouse | 57266 | Cxcl14 | chemokine (C-X-C motif) lig... | XM_011244545.2 | 43.7% | 43.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 399
- ORF length:
- 333
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtc cctgctccca cgccgcgccc cTCCGGTCAG CATGAGGCTC CTGGCGGCCG 121 CGCTGCTCCT GCTGCTGCTG GCGCTGTACA CCGCGCGTGT GGACGGGTCC AAATGCAAGT 181 GCTCCCGGAA GGGACCCAAG ATCCGCTACA GCGACGTGAA GAAGCTGGAA ATGAAGCCAA 241 AGTACCCGCA CTGCGAGGAG AAGATGGTTA TCATCACCAC CAAGAGCGTG TCCAGGTACC 301 GAGGTCAGGA GCACTGCCTG CACCCCAAGC TGCAGAGCAC CAAGCGCTTC ATCAAGTGGT 361 ACAACGCCTG GAACGAGAAG CGCAGGGTCT ACGAAGAATA CCCAACTTTC TTGTACAAAG 421 TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT 481 GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG 541 ACGATCAGTG TATGGAGTGA TTCGCTGTAC GCGTTAAGTC gacaatcaac ctctggatta 601 caaaatttgt gaaagatt