Construct: ORF TRCN0000478407

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004205.1_s317c1
Derived from:
ccsbBroadEn_10083
DNA Barcode:
GCACAAGCCTGAAGCTTCGCTAGC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NSUN4 (387338)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478407
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 387338 NSUN4 NOP2/Sun RNA methyltransfer... NM_199044.3 99.7% 99.4% 6T>A;151A>G;1010A>G
2 human 387338 NSUN4 NOP2/Sun RNA methyltransfer... NM_001256127.2 87% 86.7% 0_1ins147;4A>G;863A>G
3 human 387338 NSUN4 NOP2/Sun RNA methyltransfer... NM_001256128.2 87% 86.7% 0_1ins147;4A>G;863A>G
4 human 387338 NSUN4 NOP2/Sun RNA methyltransfer... NR_045789.1 21.6% (many diffs)
5 human 387338 NSUN4 NOP2/Sun RNA methyltransfer... NR_045790.1 19.3% (many diffs)
6 human 387338 NSUN4 NOP2/Sun RNA methyltransfer... NR_045791.1 15.8% (many diffs)
7 mouse 72181 Nsun4 NOL1/NOP2/Sun domain family... NM_028142.4 85.9% 85.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1218
ORF length:
1152
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc agcgctgaca ctgaggggtg tccgggagct gctgaagcgt gtggacctcg
121cgacggtccc gcggagacat cgatataaga agaaatgggc tgccacagag cccaaattcc
181ctgctgttcg actggctttg cagaattttg acatggctta cagtgtgcag tttggagatc
241tttggccatc aatccgtgtc agtctcctct cagagcagaa gtatggtgca ctggtcaata
301actttgctgc ctgggatcat gtaagtgcta agctggagca gctgagtgcc aaggattttg
361tgaatgaagc catctcccac tgggaactgc agtctgaggg tggccaatct gcagccccat
421cccctgcctc ctgggcctgc agtccgaacc ttcgatgctt cacttttgac agaggggata
481tcagtcgctt ccctcctgcc agacctggca gcctgggtgt catggagtac tacctgatgg
541atgctgcctc cttgctgcct gttctggccc tcggcctgca gcctggggac atcgtgcttg
601acctatgtgc agctcctggg ggaaagacac tagcgttgct tcagactggc tgttgccgca
661atcttgctgc caatgatctc tccccgtccc gaatagccag actacagaag atccttcaca
721gctatgtgcc tgaagagatc agggatggaa atcaagttcg agttacctca tgggatggca
781ggaaatgggg agaactggag ggggacacct atgaccgggt gctggtggat gtgccctgta
841ccacagaccg ccactccctt catgaggagg agaacaacaT CTTTAAGCGG TCAAGGAAGA
901AGGAGCGACA GATATTGCCT GTGCTGCAAG TGCAGCTTCT TGCGGCTGGA CTCCTTGCCA
961CCAAACCAGG AGGCCATGTT GTCTATTCTA CCTGCTCACT CTCACACTTA CAGAACGAGT
1021ATGTGGTGCA AGGTGCCATT GAGCTCCTGG CCAATCAATA CAGCATCCAG GTACGGGTGG
1081AAGATCTGAC TCACTTCCGA AGGGTTTTCA TGGACACATT TTGTTTCTTC TCATCCTGTC
1141AGGTTGGGGA GCTGGTAATA CCAAACCTCA TGGCCAATTT TGGCCCCATG TACTTCTGCA
1201AAATGCGTAG GCTGACATAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1261TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1321GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAGCACAAG CCTGAAGCTT
1381CGCTAGCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)