Construct: ORF TRCN0000478535

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013827.1_s317c1
Derived from:
ccsbBroadEn_01571
DNA Barcode:
GGTGTACGTTAGAAACCGGCCGGG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SNRPD2 (6633)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478535
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6633 SNRPD2 small nuclear ribonucleopro... NM_004597.6 100% 100%
2 human 6633 SNRPD2 small nuclear ribonucleopro... NM_001369751.1 91.5% 91.5% 0_1ins30
3 human 6633 SNRPD2 small nuclear ribonucleopro... NM_177542.3 91.5% 91.5% 0_1ins30
4 human 6633 SNRPD2 small nuclear ribonucleopro... NM_001369752.1 54.7% 45.5% 181_206del;234_235ins146
5 mouse 107686 Snrpd2 small nuclear ribonucleopro... NM_026943.1 91.2% 100% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
420
ORF length:
354
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag ccTCCTCAAC AAGCCCAAGA GTGAGATGAC CCCAGAGGAG CTGCAGAAGC
121GAGAGGAGGA GGAATTTAAC ACCGGTCCAC TCTCTGTGCT CACACAGTCA GTCAAGAACA
181ATACCCAAGT GCTCATCAAC TGCCGCAACA ATAAGAAACT CCTGGGCCGC GTGAAGGCCT
241TCGATAGGCA CTGCAACATG GTGCTGGAGA ACGTGAAGGA GATGTGGACT GAGGTACCCA
301AGAGTGGCAA GGGCAAGAAG AAGTCCAAGC CAGTCAACAA AGACCGCTAC ATCTCCAAGA
361TGTTCCTGCG CGGGGACTCA GTCATCGTGG TCCTGCGGAA CCCGCTCATC GCCGGCAAGT
421ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG
481GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC
541TTTATATATC TTGTGGAAAG GACGAGGTGT ACGTTAGAAA CCGGCCGGGA CGCGTTAAGT
601Cgacaatcaa cctctggatt acaaaatttg tgaaagatt

Download FASTA (ORF) (Full)