Construct: ORF TRCN0000478538

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF004298.1_s317c1
Derived from:
ccsbBroadEn_03630
DNA Barcode:
GGTACGAACAGCCTGCTCAAACAG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MREG (55686)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478538
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55686 MREG melanoregulin NM_018000.3 100% 100%
2 human 55686 MREG melanoregulin NM_001372188.1 81% 81% 254_403del
3 human 55686 MREG melanoregulin NM_001372189.1 74.7% 74.7% 0_1ins162
4 human 55686 MREG melanoregulin NM_001372190.1 74.7% 74.7% 0_1ins162
5 human 55686 MREG melanoregulin XM_017004475.1 55.9% 39.7% (many diffs)
6 human 55686 MREG melanoregulin XR_001738842.1 44.9% 1_146del;400_549del;939_1427del
7 human 55686 MREG melanoregulin XR_001738844.1 36.7% 1_146del;789_1745del
8 human 55686 MREG melanoregulin XR_922965.1 33.9% 1_146del;400_549del;939_1892del
9 human 55686 MREG melanoregulin XR_001738843.1 32.7% 1_146del;400_549del;939_1962del
10 mouse 381269 Mreg melanoregulin NM_001005423.2 84.6% 85.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
708
ORF length:
642
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg gctgagggac tggctgagaa ccgtgtgctg ctgctgcggg tgcgagtgct
121tggaggagcg cgccctgcct gagaaggagc ccctcgtcag tgataacaat ccatattcct
181catttggagc aactctggtg agggatgatg agaagaattt atggagtatg ccccatgatg
241tgtcccacac agaggcagac gacgacagaa ccctgtacaa tttgatagtc attcgtaatc
301agcaggccaa agactcagag gagtggcaga agctcaacta tgatatccat accctgcggc
361aggttcGAAG GGAAGTAAGA AACAGATGGA AGTGCATCTT AGAAGATTTA GGTTTTCAAA
421AGGAAGCTGA CTCTTTGTTG TCAGTGACTA AACTCAGCAC CATCAGTGAT TCTAAAAACA
481CAAGGAAAGC TCGAGAGATG TTGTTAAAAC TGGCTGAAGA AACCAATATT TTCCCAACAA
541GTTGGGAGCT CTCAGAGAGA TATCTCTTTG TTGTGGACCG TCTCATTGCA CTTGATGCTG
601CAGAAGAGTT CTTTAAGCTT GCTCGTCGAA CTTACCCCAA GAAGCCTGGG GTTCCATGCC
661TGGCAGATGG CCAGAAAGAA CTGCACTACC TTCCGTTTCC AAGTCCCTAC CCAACTTTCT
721TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA
781CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT
841GTGGAAAGGA CGAGGTACGA ACAGCCTGCT CAAACAGACG CGTTAAGTCg acaatcaacc
901tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)

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