Construct: ORF TRCN0000478588
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011166.1_s317c1
- Derived from:
- ccsbBroadEn_08601
- DNA Barcode:
- GCATTTCCCTGGCCCAACACTCAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- DBNDD2 (55861)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478588
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55861 | DBNDD2 | dysbindin domain containing 2 | NM_001048221.2 | 99.7% | 99.3% | 280A>G |
| 2 | human | 55861 | DBNDD2 | dysbindin domain containing 2 | NM_001048223.2 | 99.7% | 99.3% | 280A>G |
| 3 | human | 55861 | DBNDD2 | dysbindin domain containing 2 | NM_001197139.1 | 99.7% | 99.3% | 280A>G |
| 4 | human | 55861 | DBNDD2 | dysbindin domain containing 2 | NM_001197140.1 | 99.7% | 99.3% | 280A>G |
| 5 | human | 55861 | DBNDD2 | dysbindin domain containing 2 | NM_001048222.2 | 64.4% | 59.6% | (many diffs) |
| 6 | human | 55861 | DBNDD2 | dysbindin domain containing 2 | NM_001048224.2 | 64.4% | 59.6% | (many diffs) |
| 7 | human | 55861 | DBNDD2 | dysbindin domain containing 2 | NM_018478.3 | 62% | 61.7% | 1_294del;574A>G |
| 8 | human | 55861 | DBNDD2 | dysbindin domain containing 2 | NM_001048225.2 | 61% | 60.8% | 1_306del;586A>G |
| 9 | human | 55861 | DBNDD2 | dysbindin domain containing 2 | NM_001048226.2 | 39.6% | 36.5% | (many diffs) |
| 10 | human | 767557 | SYS1-DBNDD2 | SYS1-DBNDD2 readthrough (NM... | NR_003189.2 | 35.8% | 1_388del;668A>G;872_1344del | |
| 11 | mouse | 52840 | Dbndd2 | dysbindin (dystrobrevin bin... | NM_001048227.1 | 84% | 84.4% | (many diffs) |
| 12 | mouse | 52840 | Dbndd2 | dysbindin (dystrobrevin bin... | NM_001048228.1 | 84% | 84.4% | (many diffs) |
| 13 | mouse | 52840 | Dbndd2 | dysbindin (dystrobrevin bin... | NM_001048229.1 | 84% | 84.4% | (many diffs) |
| 14 | mouse | 52840 | Dbndd2 | dysbindin (dystrobrevin bin... | NM_026797.2 | 84% | 84.4% | (many diffs) |
| 15 | mouse | 52840 | Dbndd2 | dysbindin (dystrobrevin bin... | XM_006499895.3 | 84% | 84.4% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 549
- ORF length:
- 483
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga cccaaatcct cgggccgccc tggagcgcca gcagctccgc cttcgggagc 121 ggcaaaaatt cttcgaggac attttacagc cagagacaga gtttgtcttt ccTCTGTCCC 181 ATCTGCATCT CGAGTCGCAG AGACCCCCCA TAGGTAGTAT CTCATCCATG GAAGTGAATG 241 TGGACACACT GGAGCAAGTA GAACTTATTG ACCTTGGGGA CCCGGATGCA GCAGATGTGT 301 TCTTGCCTTG CGAAGATCCT CCACCAACCC CCCAGTCGTC TGGGGTGGAC AACCATTTGG 361 AGGAGCTGAG CCTGCCGGTG CCTACATCAG ACAGGACCAC ATCTAGGACC TCCTCCTCCT 421 CCTCCTCCGA CTCCTCCACC AACCTGCATA GCCCAAATCC AAGTGATGAT GGAGCAGATA 481 CGCCCTTGGC ACAGTCGGAT GAAGAGGAGG AAAGGGGTGA TGGAGGGGCA GAGCCTGGAG 541 CCTGCAGCTA CCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC 601 CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA 661 TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAGCATTT CCCTGGCCCA ACACTCAGAC 721 GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt