Construct: ORF TRCN0000478608
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008584.1_s317c1
- Derived from:
- ccsbBroadEn_15911
- DNA Barcode:
- CTGGTCCCGATACCGCACTCTGTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CEP72 (55722)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478608
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55722 | CEP72 | centrosomal protein 72 | XM_017009626.1 | 100% | 100% | |
| 2 | human | 55722 | CEP72 | centrosomal protein 72 | XM_017009627.1 | 100% | 100% | |
| 3 | human | 55722 | CEP72 | centrosomal protein 72 | XM_005248322.3 | 76.7% | 76.7% | 1_417del |
| 4 | human | 55722 | CEP72 | centrosomal protein 72 | XM_011514064.2 | 76.7% | 76.7% | 1_417del |
| 5 | human | 55722 | CEP72 | centrosomal protein 72 | NM_018140.4 | 70.7% | 70.7% | 1_567del |
| 6 | human | 55722 | CEP72 | centrosomal protein 72 | XM_011514063.1 | 70.7% | 70.7% | 1_567del |
| 7 | human | 55722 | CEP72 | centrosomal protein 72 | XR_001742148.1 | 64.2% | 1_509del;1884_2138del | |
| 8 | human | 55722 | CEP72 | centrosomal protein 72 | XR_001742146.1 | 62.2% | 1_579del;1954_2208del | |
| 9 | human | 55722 | CEP72 | centrosomal protein 72 | XR_925628.1 | 62% | 1_585del;1960_2214del | |
| 10 | human | 55722 | CEP72 | centrosomal protein 72 | XR_925630.2 | 35.8% | 1_585del;1960_3831del | |
| 11 | human | 55722 | CEP72 | centrosomal protein 72 | NR_164122.1 | 30.7% | 1_747del;2122_4475del | |
| 12 | human | 55722 | CEP72 | centrosomal protein 72 | XR_001742149.1 | 20.8% | 1_583del;1555_4619del;5023_6586del | |
| 13 | human | 55722 | CEP72 | centrosomal protein 72 | XR_925631.2 | 20.8% | 1_585del;1557_4621del;5025_6588del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1440
- ORF length:
- 1374
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgga tgcggatgac gaggcagtcc tgaacctcat tgcagagtgc gagtgggacc 121 tcggcaggcc tcccgggagc acgagcttca gccagaaggg gcgtgaggcc gactctcgtg 181 gttcccaaga atccagacat ctgttgagcc cgcagttggt acagtaccag tgtggggact 241 ctgggaagca gggccgtgag acgaggagga gcagctgcag agggtgctgt ctggagaaga 301 tgccttggag ccagctctgt ggagagcttc cgccactgta cggagcggag ccagaggcct 361 cccgtgcccc caggccacac acgtacttca ccccacaccc agactccatg gataccgagg 421 actcggcctc ttctcagaag ttggatttgt caggagaaat ggtgcctggt cccctgccag 481 cccccggaaa gtgcaggaag cgaagaatgc ctgttggaag attccagacg ttttcggacc 541 aggagggttt gggctgcccg gagagaactc atgggtcctc cgtgcccaag gagagcctga 601 gcagacagga cagctcagaa agcaggaacg ggaggacctt gtctcagcct gaggcctcgg 661 agactgagga gcagaggtct cggggtgtga ccgacaccag agagccgtct cccgggtcac 721 actcggctct acccgggaag aagacggccc tgcaggcggc gctcctggag acgctcttgg 781 acctggtgga caggagctgg ggcggctgca ggtccctgca cagcaacgag gcattccttg 841 ctcaggcaag acacatcttg tcatctgttg aagaattcac agcagctcag gacagctctg 901 cgatggtggg tgaagatgtc ggctccctgg ctctggagag taagtccctg caaagccgcc 961 ttgctgagca gcagcagcag cacgcccggg agatgagcga ggtgacggcg gagctgcacc 1021 acacacacaa ggagctggat gatttgagac aacatttaga taaatctttg gaagagaaca 1081 gtaggttaaa aTCGCTTTTG TTGAGTATGA AAAAGGAAGT GAAGAGTGCA GACACTGCAG 1141 CCACGTTAAA TTTGCAGATC GCTGGACTTC AAACAAGTGT GAAGAGGCTG TGTGGCGAGA 1201 TTGTGGAACT GAAGCAGCAC CTGGAGCACT ACGACAAGAT CCAGGAGCTC ACGCAGATGC 1261 TGCAGGAGAG CCACAGCTCC CTGGTCAGCA CCAATGAACA CCTGCTGCAG GAGCTGAGCC 1321 AGGTGCGGGC GCAGCACAGA GCCGAGGTGG AGCAGATGCA CTGGAGCTAC CAGGAGCTCA 1381 AGAAGACCAT GGCCCTGTTT CCACACAGCA GCGCCAGCCA TGGAGGCTGC CAGGCCTGCT 1441 GCCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 1501 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC 1561 TTTATATATC TTGTGGAAAG GACGACTGGT CCCGATACCG CACTCTGTAA CGCGTTAAGT 1621 Cgacaatcaa cctctggatt acaaaatttg tgaaagatt