Construct: ORF TRCN0000478616
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016371.1_s317c1
- Derived from:
- ccsbBroadEn_11357
- DNA Barcode:
- ACGGCTAGGTAGTTGTCCCGGGTC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TRIP11 (9321)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478616
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 9321 | TRIP11 | thyroid hormone receptor in... | XR_001750598.2 | 4.1% | (many diffs) | |
| 2 | human | 9321 | TRIP11 | thyroid hormone receptor in... | NM_004239.4 | 3.8% | 3.6% | (many diffs) |
| 3 | human | 9321 | TRIP11 | thyroid hormone receptor in... | NM_001321851.1 | 3.8% | 3.6% | (many diffs) |
| 4 | human | 9321 | TRIP11 | thyroid hormone receptor in... | XR_943560.2 | 3.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 90
- ORF end:
- 330
- ORF length:
- 240
- Sequence:
-
1 TCAGACAGTG GTTCAAAGTT TTTTTCTTCC ATTTCAGGTG TCGTGAGGCT AGCATCGATT 61 GATCAACAAG TTTGTACAAA AAAGTTGGCA TGTCGTCCTG GCTTGGGGGC CTCGGCTCCG 121 GATTGGGCCA GTCTCTGGGT CAAGTCGGGG GCAGCCTGGC TTCCCTCACT GGCCAGATAT 181 CAAACTTTAC AAAGGATATG CTGATGGAGG GCACGGAGGA AGTGGAAGCA GAATTACCTG 241 ATTCTAGGAC AAAGGAAATT GAAGCCATTC ATGCAATCTT GAGATCAGAG TTGCCTTTGT 301 GTACACACCT GCTTTCAGCC TTCTACATAT GCCCAACTTT CTTGTACAAA GTGGTTGATA 361 TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC 421 CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGAACGGC 481 TAGGTAGTTG TCCCGGGTCA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg 541 tgaaagatt