Construct: ORF TRCN0000478645

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014555.1_s317c1
Derived from:
ccsbBroadEn_12089
DNA Barcode:
GCGCTTACTCCTGTGCGCTGACCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ZCCHC10 (54819)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478645
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001300816.3 100% 100%
2 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001300817.3 96.8% 96.8% 309_310insAGGTCTAAGAGTGTAACC
3 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001308127.2 95% 95% 106_135del
4 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001300818.3 92.7% 92.7% 265_266ins42
5 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_017665.4 88.5% 88.5% 41_42ins66
6 human 54819 ZCCHC10 zinc finger CCHC-type conta... XM_011543502.1 88.1% 88.1% 106_135del;295_296ins42
7 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001300819.3 81.2% 81.2% 41_42ins66;199_200ins42
8 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001308128.2 60.4% 60.4% 41_42ins228
9 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001308129.2 53.1% 53.1% 41_42ins270
10 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001300822.3 51.9% 47.9% 268_295del;342_343ins262
11 human 54819 ZCCHC10 zinc finger CCHC-type conta... XM_011543503.2 49.5% 45.6% 106_135del;298_325del;372_373ins262
12 human 54819 ZCCHC10 zinc finger CCHC-type conta... NM_001308130.2 41% 36.8% 41_42ins66;202_229del;276_277ins262
13 human 54819 ZCCHC10 zinc finger CCHC-type conta... NR_131766.2 24.4% (many diffs)
14 human 54819 ZCCHC10 zinc finger CCHC-type conta... NR_125337.3 23.3% (many diffs)
15 human 54819 ZCCHC10 zinc finger CCHC-type conta... NR_131767.2 23% (many diffs)
16 mouse 67966 Zcchc10 zinc finger, CCHC domain co... NM_026479.4 70.6% 74.2% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
642
ORF length:
576
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggc gactcccatg catcggctaa tagcccggag acaagcattc gacacagagt
121tgcagcctgt caagaccttt tggatcctga ttcagccatc catcgttatt agtgaagcaa
181ataagcaaca tgtaagatgt cagaaatgct tggaatttgg acattggact tatgaatgca
241caggaaaaag aaaataccta cataggcccT CAAGGACAGC AGAACTAAAG AAAGCTTTAA
301AAGAAAAAGA AAACAGATTA TTATTGCAAC AAAGCATTGG AGAAACCAAT GTAGAAAGAA
361AGGCCAAGAA AAAAAGGTCT AAGAGTGTAA CCAGTTCCAG TAGCAGTAGC AGTGACAGTT
421CTGCCAGTGA TTCTTCATCA GAGAGTGAAG AAACATCTAC CTCTTCCTCC TCAGAGGACA
481GTGACACTGA TGAAAGCTCC TCTAGTTCCT CATCCTCAGC CTCCTCCACA ACCTCTTCCT
541CCTCCTCTGA TTCAGACTCA GATTCCAGCT CTTCCAGTAG CAGTAGCACC AGCACAGATA
601GCAGCTCTGA CGATGAACCA CCAAAGAAGA AGAAAAAGAA ATACCCAACT TTCTTGTACA
661AAGTGGTTGA TATCGGTAAG CCTATCCCTA ACCCTCTCCT CGGTCTCGAT TCTACGTAGT
721AATGAACTAG TCCGTAACTT GAAAGTATTT CGATTTCTTG GCTTTATATA TCTTGTGGAA
781AGGACGAGCG CTTACTCCTG TGCGCTGACC TACGCGTTAA GTCgacaatc aacctctgga
841ttacaaaatt tgtgaaagat t

Download FASTA (ORF) (Full)