Construct: ORF TRCN0000478673

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016913.1_s317c1
Derived from:
ccsbBroadEn_03268
DNA Barcode:
CTCGAATAAAATTCAGAGCCAGTG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
GMPR2 (51292)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478673
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51292 GMPR2 guanosine monophosphate red... NM_001002000.3 100% 100%
2 human 51292 GMPR2 guanosine monophosphate red... NM_001002001.3 100% 100%
3 human 51292 GMPR2 guanosine monophosphate red... NM_001002002.3 100% 100%
4 human 51292 GMPR2 guanosine monophosphate red... NM_016576.5 95% 95% 1_54del
5 human 51292 GMPR2 guanosine monophosphate red... NM_001283023.2 91.9% 91.9% 205_206ins84
6 human 51292 GMPR2 guanosine monophosphate red... NM_001351024.2 86.2% 79.6% (many diffs)
7 human 51292 GMPR2 guanosine monophosphate red... NM_001351025.2 86.2% 79.6% (many diffs)
8 human 51292 GMPR2 guanosine monophosphate red... NM_001351026.2 86.2% 79.6% (many diffs)
9 human 51292 GMPR2 guanosine monophosphate red... NM_001351022.2 85% 85% 856_1038del
10 human 51292 GMPR2 guanosine monophosphate red... NM_001351023.2 85% 85% 856_1038del
11 human 51292 GMPR2 guanosine monophosphate red... NM_001283022.2 81.4% 81.4% 1_54del;910_1092del
12 human 51292 GMPR2 guanosine monophosphate red... NM_001283021.2 73.5% 68% (many diffs)
13 human 51292 GMPR2 guanosine monophosphate red... NR_104265.2 57.6% (many diffs)
14 mouse 105446 Gmpr2 guanosine monophosphate red... NM_177992.2 89% 95.1% (many diffs)
15 mouse 105446 Gmpr2 guanosine monophosphate red... XM_006518366.1 89% 95.1% (many diffs)
16 mouse 105446 Gmpr2 guanosine monophosphate red... XM_011244882.2 75.3% 78.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1110
ORF length:
1044
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc tcatattgac aacgatgtga aactggactt caaggatgtc cttttgaggc
121ccaaacgcag tacccttaag tctcgaagtg aggtggatct cacaagatcc ttttcatttc
181ggaactcaaa gcagacatac tctggggttc ccatcattgc tgccaatatg gatactgtgg
241gcacctttga gatggccaag gttctctgta agttctctct cttcactgct gtccataagc
301actatagcct cgttcagtgg caagagtttg ctggccagaa tcctgactgt cttgagcatc
361tggctgccag ctcaggcaca ggctcttctg actttgagca gctggaacag atcctggaag
421ctattcccca ggtgaagtat atatgcctgg atgtggcaaa tggctactct gaacactttg
481ttgaatttgt aaaagatgta cggaagcgct tcccccagca caccatcatg gcagggaatg
541tggtaacagg agagatggta gaagagctca tcctttctgg ggctgacatc atcaaagtgg
601gaattgggcc aggctctgtg tgtactactc ggaagaaaac tggagtgggg tatccacagc
661tcagcgcagt gatggagtgt gcagatgctg ctcatggcct caaaggccac atcatttcag
721atggaggttg cagctgtcct ggggatgtgg ccaaggcttt TGGGGCAGGA GCTGACTTCG
781TGATGCTGGG TGGCATGCTG GCTGGGCACA GTGAGTCAGG TGGTGAGCTC ATCGAGAGGG
841ATGGCAAGAA GTACAAGCTC TTCTATGGAA TGAGTTCTGA AATGGCCATG AAGAAGTATG
901CTGGGGGCGT GGCTGAGTAC AGAGCCTCAG AGGGAAAGAC AGTGGAAGTT CCTTTTAAAG
961GAGATGTGGA ACATACCATC CGAGACATCC TAGGAGGGAT CCGCTCTACG TGTACCTATG
1021TGGGAGCAGC TAAGCTCAAA GAGTTGAGCA GGAGAACTAC CTTCATCCGA GTCACCCAGC
1081AGGTGAATCC AATCTTCAGT GAGGCGTGCT ACCCAACTTT CTTGTACAAA GTGGTTGATA
1141TCGGTAAGCC TATCCCTAAC CCTCTCCTCG GTCTCGATTC TACGTAGTAA TGAACTAGTC
1201CGTAACTTGA AAGTATTTCG ATTTCTTGGC TTTATATATC TTGTGGAAAG GACGACTCGA
1261ATAAAATTCA GAGCCAGTGA CGCGTTAAGT Cgacaatcaa cctctggatt acaaaatttg
1321tgaaagatt

Download FASTA (ORF) (Full)