Construct: ORF TRCN0000478856

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF009115.1_s317c1
Derived from:
ccsbBroadEn_01700
DNA Barcode:
CCAACAACGACGCTCCTGAGAGAC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TPH1 (7166)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478856
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 7166 TPH1 tryptophan hydroxylase 1 NM_004179.3 100% 100%
2 mouse 21990 Tph1 tryptophan hydroxylase 1 NM_001136084.2 85.3% 89.4% (many diffs)
3 mouse 21990 Tph1 tryptophan hydroxylase 1 NM_009414.3 85.3% 89.4% (many diffs)
4 mouse 21990 Tph1 tryptophan hydroxylase 1 XM_011250846.2 67.3% 71.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1401
ORF length:
1332
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gattgaagac aataaggaga acaaagacca ttccttagaa aggggaagag
121caagtctcat tttttcctta aagaatgaag ttggaggact tataaaagcc ctgaaaatct
181ttcaggagaa gcatgtgaat ctgttacata tcgagtcccg aaaatcaaaa agaagaaact
241cagaatttga gatttttgtt gactgtgaca tcaacagaga acaattgaat gatatttttc
301atctgctgaa gtctcatacc aatgttctct ctgtgaatct accagataat tttactttga
361aggaagatgg tatggaaact gttccttggt ttccaaagaa gatttctgac ctggaccatt
421gtgccaacag agttctgatg tatggatctg aactagatgc agaccatcct ggcttcaaag
481acaatgtcta ccgtaaacgt cgaaagtatt ttgcggactt ggctatgaac tataaacatg
541gagaccccat tccaaaggtt gaattcactg aagaggagat taagacctgg ggaaccgtat
601tccaagagct caacaaactc tacccaaccc atgcttgcag agagtatctc aaaaacttac
661ctttgctttc taaatattgt ggatatcggg aggataatat cccacaattg gaagatgtct
721ccaacttttt aaaagagcgt acaggttttt ccatccgtcc tgtggctggt tacttatcac
781caagagattt cttatcaggt ttagcctttc gagtttttca ctgcactcaa tatgtgagac
841acagttcaga tcccttctat accccagagc cagatacctg ccatgaactc ttaggtcatg
901tcccgctttt ggctgaacct agttttgccc aattctccca agaaattggc ttggcttctc
961ttggcgcttc agaggaggct gttcaaaaac tggcaacgtg ctactttttc actgtggagt
1021ttggtctatg taaacaagat ggacagcTAA GAGTCTTTGG TGCTGGCTTA CTTTCTTCTA
1081TCAGTGAACT CAAACATGCA CTTTCTGGAC ATGCCAAAGT AAAGCCCTTT GATCCCAAGA
1141TTACCTGCAA ACAGGAATGT CTTATCACAA CTTTTCAAGA TGTCTACTTT GTATCTGAAA
1201GTTTTGAAGA TGCAAAGGAG AAGATGAGAG AATTTACCAA AACAATTAAG CGTCCATTTG
1261GAGTGAAGTA TAATCCATAT ACACGGAGTA TTCAGATCCT GAAAGACACC AAGAGCATAA
1321CCAGTGCCAT GAATGAGCTG CAGCATGATC TCGATGTTGT CAGTGATGCC CTTGCTAAGG
1381TCAGCAGGAA GCCGAGTATC TTGCCAACTT TCTTGTACAA AGTGGTTGAT ATCGGTAAGC
1441CTATCCCTAA CCCTCTCCTC GGTCTCGATT CTACGTAGTA ATGAACTAGT CCGTAACTTG
1501AAAGTATTTC GATTTCTTGG CTTTATATAT CTTGTGGAAA GGACGACCAA CAACGACGCT
1561CCTGAGAGAC ACGCGTTAAG TCgacaatca acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)