Construct: ORF TRCN0000478873

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007386.2_s317c1
Derived from:
ccsbBroadEn_06427
DNA Barcode:
TGCACCCTTGTACCACCCCTATCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IFIT3 (3437)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000478873
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3437 IFIT3 interferon induced protein ... NM_001031683.4 99.8% 99.5% 83A>T;527T>C
2 human 3437 IFIT3 interferon induced protein ... NM_001549.6 99.8% 99.5% 83A>T;527T>C
3 human 3437 IFIT3 interferon induced protein ... NM_001289758.2 89.3% 89.1% 0_1ins156;371T>C
4 human 3437 IFIT3 interferon induced protein ... NM_001289759.2 89.3% 89.1% 0_1ins156;371T>C
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1536
ORF length:
1470
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgag tgaggtcacc aagaattccc tggagaaaat ccttccacag ctgaaatgcc
121atttcacctg gaacttattc aaggaagtca gtgtctcaag ggatctagaa gatagagtgt
181gtaaccagat tgaattttta aacactgagt tcaaagctac aatgtacaac ttgttggcct
241acataaaaca cctagatggt aacaacgagg cagccctgga atgcttacgg caagctgaag
301agttaatcca gcaagaacat gctgaccaag cagaaatcag aagtctagtc acttggggaa
361actacgcctg ggtctactat cacttgggca gactctcaga tgctcagatt tatgtagata
421aggtgaaaca aacctgcaag aaattttcaa atccatacag tattgagtat tctgaacttg
481actgtgagga agggtggaca caactgaagt gtggaagaaa tgaaagggcg aaggtgtgtt
541ttgagaaggc tctggaagaa aagcccaaca acccagaatt ctcctctgga ccggcaattg
601cgatgtacca tctggataat cacccagaga aacagttctc tactgatgtt ttgaagcagg
661ccattgagct gagtcctgat aaccaatacg tcaaggttct cttgggcctg aaactgcaga
721agatgaataa agaagctgaa ggagagcagt ttgttgaaga agccttggaa aagtctcctt
781gccaaacaga tgtcctccgc agtgcagcca aattttacag aagaaaaggt gacctagaca
841aagctattga actgtttcaa cgggtgttgg aatccacacc aaacaatggc tacctctatc
901accagattgg gtgctgctac aaggcaaaag taagacaaat gcagaataca ggagaatctg
961aagctagtgg aaataaagag atgattgaag cactaaagca atatgctatg gactattcga
1021ataaagctct tgagaaggga ctgaatcctc tgaatgcata ctccgatctc gctgagttcc
1081tggagacgga atgttatcag acaccattca ataaggaagt ccctgatgct gaaaagcaac
1141aatcccatca gcgctactgc aaccttcaga aatataatgg gaagtctgaa gacaCTGCTG
1201TGCAACATGG TTTAGAGGGT TTGTCCATAA GCAAAAAATC AACTGACAAG GAAGAGATCA
1261AAGACCAACC ACAGAATGTA TCTGAAAATC TGCTTCCACA AAATGCACCA AATTATTGGT
1321ATCTTCAAGG ATTAATTCAT AAGCAGAATG GAGATCTGCT GCAAGCAGCC AAATGTTATG
1381AGAAGGAACT GGGCCGCCTG CTAAGGGATG CCCCTTCAGG CATAGGCAGT ATTTTCCTGT
1441CAGCATCTGA GCTTGAGGAT GGTAGTGAGG AAATGGGCCA GGGCGCAGTC AGCTCCAGTC
1501CCAGAGAGCT CCTCTCTAAC TCAGAGCAAC TGAACTGCCC AACTTTCTTG TACAAAGTGG
1561TTGATATCGG TAAGCCTATC CCTAACCCTC TCCTCGGTCT CGATTCTACG TAGTAATGAA
1621CTAGTCCGTA ACTTGAAAGT ATTTCGATTT CTTGGCTTTA TATATCTTGT GGAAAGGACG
1681ATGCACCCTT GTACCACCCC TATCGACGCG TTAAGTCgac aatcaacctc tggattacaa
1741aatttgtgaa agatt

Download FASTA (ORF) (Full)