Transcript: Human NM_001289758.2

Homo sapiens interferon induced protein with tetratricopeptide repeats 3 (IFIT3), transcript variant 3, mRNA.

Source:
NCBI, updated 2019-08-27
Taxon:
Homo sapiens (human)
Gene:
IFIT3 (3437)
Length:
2508
CDS:
352..1668

Additional Resources:

NCBI RefSeq record:
NM_001289758.2
NBCI Gene record:
IFIT3 (3437)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001289758.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000293558 GCTATGGACTATTCGAATAAA pLKO_005 1135 CDS 100% 15.000 21.000 N IFIT3 n/a
2 TRCN0000115864 GCGATGTACCATCTGGATAAT pLKO.1 730 CDS 100% 13.200 18.480 N IFIT3 n/a
3 TRCN0000286167 GCGATGTACCATCTGGATAAT pLKO_005 730 CDS 100% 13.200 18.480 N IFIT3 n/a
4 TRCN0000115863 GCACCAAATTATTGGTATCTT pLKO.1 1435 CDS 100% 0.563 0.788 N IFIT3 n/a
5 TRCN0000293559 ATGTTGCTCTAAGGTACATTT pLKO_005 1779 3UTR 100% 13.200 9.240 N IFIT3 n/a
6 TRCN0000115865 CCTTCAGGCATAGGCAGTATT pLKO.1 1543 CDS 100% 13.200 9.240 N IFIT3 n/a
7 TRCN0000286166 CCTTCAGGCATAGGCAGTATT pLKO_005 1543 CDS 100% 13.200 9.240 N IFIT3 n/a
8 TRCN0000115866 CACTGAGTTCAAAGCTACAAT pLKO.1 333 5UTR 100% 5.625 3.938 N IFIT3 n/a
9 TRCN0000298159 CACTGAGTTCAAAGCTACAAT pLKO_005 333 5UTR 100% 5.625 3.938 N IFIT3 n/a
10 TRCN0000115862 CACAGTGAAATCCCGTCTCTA pLKO.1 1912 3UTR 100% 4.950 2.475 Y IFIT3 n/a
11 TRCN0000078113 GCCTGTAATCCCAGCACTTTA pLKO.1 1837 3UTR 100% 13.200 6.600 Y LIAS n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001289758.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_06428 pDONR223 100% 89.3% 89.3% None 0_1ins156 n/a
2 ccsbBroad304_06428 pLX_304 0% 89.3% 89.3% V5 0_1ins156 n/a
3 TRCN0000467954 TCTCAAAGGTTAATTTATAGAGGT pLX_317 27.1% 89.3% 89.3% V5 0_1ins156 n/a
4 ccsbBroadEn_06427 pDONR223 100% 89.3% 89.1% None 0_1ins156;371T>C n/a
5 ccsbBroad304_06427 pLX_304 0% 89.3% 89.1% V5 0_1ins156;371T>C n/a
6 TRCN0000478873 TGCACCCTTGTACCACCCCTATCG pLX_317 23.6% 89.3% 89.1% V5 0_1ins156;371T>C n/a
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