Construct: ORF TRCN0000478911
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000811.1_s317c1
- Derived from:
- ccsbBroadEn_02344
- DNA Barcode:
- GCATGCAGTTCACATCGGATTACC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LHFPL6 (10186)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478911
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10186 | LHFPL6 | LHFPL tetraspan subfamily m... | NM_005780.3 | 100% | 100% | |
| 2 | human | 10186 | LHFPL6 | LHFPL tetraspan subfamily m... | XM_011534861.1 | 100% | 100% | |
| 3 | mouse | 108927 | Lhfp | lipoma HMGIC fusion partner | NM_175386.3 | 89% | 97% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 666
- ORF length:
- 600
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc atccagcctg acttgtactg gagtaatctg ggctttgctg tcttttcttt 121 gtgctgccac ctcctgcgtg gggttcttta tgccttactg gctctgggga tcacagctgg 181 gcaagcctgt gtccttcggt accttccgga ggtgctcata tcctgtgcat gatgagagtc 241 ggcagatgat ggtgatggtg gaggaatgtg ggcgctatgc ctccttccag ggcatcccca 301 gcgcagaatg gaggatctgc accatagtga ccggcctggg ttgtggcctc ctccTCCTGG 361 TGGCGCTCAC TGCCCTCATG GGTTGCTGTG TTTCCGACCT CATCTCCAGG ACAGTGGGAA 421 GAGTGGCTGG AGGAATTCAG TTTCTTGGGG GCTTGTTGAT TGGTGCTGGC TGTGCCCTCT 481 ACCCCTTGGG CTGGGACAGT GAGGAAGTCC GGCAGACTTG TGGCTACACT TCTGGCCAGT 541 TTGACCTGGG GAAGTGTGAA ATCGGCTGGG CCTACTACTG CACGGGAGCA GGTGCCACTG 601 CCGCCATGCT GCTGTGCACG TGGCTGGCTT GCTTTTCGGG CAAGAAACAG AAGCACTACC 661 CATACTGCCC AACTTTCTTG TACAAAGTGG TTGATATCGG TAAGCCTATC CCTAACCCTC 721 TCCTCGGTCT CGATTCTACG TAGTAATGAA CTAGTCCGTA ACTTGAAAGT ATTTCGATTT 781 CTTGGCTTTA TATATCTTGT GGAAAGGACG AGCATGCAGT TCACATCGGA TTACCACGCG 841 TTAAGTCgac aatcaacctc tggattacaa aatttgtgaa agatt