Transcript: Human NM_005780.3

Homo sapiens LHFPL tetraspan subfamily member 6 (LHFPL6), mRNA.

Source:
NCBI, updated 2019-05-02
Taxon:
Homo sapiens (human)
Gene:
LHFPL6 (10186)
Length:
2132
CDS:
486..1088

Additional Resources:

NCBI RefSeq record:
NM_005780.3
NBCI Gene record:
LHFPL6 (10186)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_005780.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000163841 CAGCCGAAGATATGAGAGTAA pLKO.1 1953 3UTR 100% 4.950 6.930 N LHFPL6 n/a
2 TRCN0000163971 CCTATGCACAAACGTGGATTA pLKO.1 1611 3UTR 100% 10.800 7.560 N LHFPL6 n/a
3 TRCN0000159221 CCACAGAGTATTGTTAATGTA pLKO.1 1351 3UTR 100% 5.625 3.938 N LHFPL6 n/a
4 TRCN0000166531 CAGACTTGTGGCTACACTTCT pLKO.1 933 CDS 100% 4.950 3.465 N LHFPL6 n/a
5 TRCN0000164796 CTACACTTCTGGCCAGTTTGA pLKO.1 944 CDS 100% 4.950 3.465 N LHFPL6 n/a
6 TRCN0000165234 GAATGGAGGATCTGCACCATA pLKO.1 726 CDS 100% 4.950 3.465 N LHFPL6 n/a
7 TRCN0000165473 GCCTATGCACAAACGTGGATT pLKO.1 1610 3UTR 100% 4.950 3.465 N LHFPL6 n/a
8 TRCN0000163655 GAAACAGAAGCACTACCCATA pLKO.1 1064 CDS 100% 4.050 2.835 N LHFPL6 n/a
9 TRCN0000162909 GTTCTTTATGCCTTACTGGCT pLKO.1 563 CDS 100% 0.660 0.396 N LHFPL6 n/a
10 TRCN0000166364 CACACACACACACACACACAA pLKO.1 1401 3UTR 100% 4.950 2.475 Y KAAG1 n/a
11 TRCN0000125730 CCGGCAGACTTGTGGCTACAT pLKO.1 929 CDS 100% 1.650 1.155 N Lhfp n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_005780.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02344 pDONR223 100% 100% 100% None n/a
2 ccsbBroad304_02344 pLX_304 0% 100% 100% V5 n/a
3 TRCN0000478911 GCATGCAGTTCACATCGGATTACC pLX_317 51.9% 100% 100% V5 n/a
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