Construct: ORF TRCN0000478939
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011882.2_s317c1
- Derived from:
- ccsbBroadEn_12244
- DNA Barcode:
- CGCTGCTTCGAGTCATTATCGTTG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- URGCP (55665)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478939
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55665 | URGCP | upregulator of cell prolife... | NM_001077664.2 | 96.2% | 96.2% | (many diffs) |
| 2 | human | 55665 | URGCP | upregulator of cell prolife... | NM_001290075.1 | 96.2% | 96.2% | (many diffs) |
| 3 | human | 55665 | URGCP | upregulator of cell prolife... | NM_001290076.1 | 96.2% | 96.2% | (many diffs) |
| 4 | human | 55665 | URGCP | upregulator of cell prolife... | NM_017920.4 | 92.7% | 92.7% | (many diffs) |
| 5 | human | 55665 | URGCP | upregulator of cell prolife... | NM_001077663.2 | 91.8% | 91.8% | (many diffs) |
| 6 | mouse | 72046 | Urgcp | upregulator of cell prolife... | XM_011243756.2 | 82.8% | 86.2% | (many diffs) |
| 7 | mouse | 72046 | Urgcp | upregulator of cell prolife... | XM_011243757.2 | 82.8% | 86.2% | (many diffs) |
| 8 | mouse | 72046 | Urgcp | upregulator of cell prolife... | NM_001077661.1 | 79.9% | 83.1% | (many diffs) |
| 9 | mouse | 72046 | Urgcp | upregulator of cell prolife... | XM_006514814.3 | 79.9% | 83.1% | (many diffs) |
| 10 | mouse | 72046 | Urgcp | upregulator of cell prolife... | XM_006514815.3 | 79.9% | 83.1% | (many diffs) |
| 11 | mouse | 72046 | Urgcp | upregulator of cell prolife... | XM_011243755.2 | 79.9% | 83.1% | (many diffs) |
| 12 | mouse | 72046 | Urgcp | upregulator of cell prolife... | XM_011243754.2 | 79.1% | 82.2% | (many diffs) |
| 13 | mouse | 72046 | Urgcp | upregulator of cell prolife... | XM_011243753.2 | 78.7% | 81.9% | (many diffs) |
| 14 | mouse | 72046 | Urgcp | upregulator of cell prolife... | NM_178623.3 | 76.2% | 79.2% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2634
- ORF length:
- 2568
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgct gtcacttttg ggcctagaga cgtaccaggt ccagaaactc agcctccagg 121 actctctgca gatcagtttt gacagtatga agaactgggc ccctcaggtt cccaaagact 181 tgccctggaa tttcctcagg aagttgcagg ccctcaatgc tgatgccagg aataccacta 241 tggtgctgga cgtgctccca gacgccaggc ctgtggagaa ggagagccag atggaagagg 301 agatcatcta ctgggaccca gctgatgacc ttgctgccga catttattcc ttttctgagc 361 tgcccacccc tgatacgcca gtgaacccct tagaccttct ctgtgccctg ctgctctcct 421 cagacagttt cctgcaacaa gaaatagcgt tgaaaatggc cctctgccag tttgcactcc 481 cactcgtgtt gcctgactcg gagaaccact accatacatt tctgctgtgg gccatgcggg 541 gcattgtgag gacatggtgg tcccagcccc caaggggcat ggggagcttc cgggaagaca 601 gcgtggtctt gtccagggcg cccgccttcg ccttcgtgcg catggacgtc agtagcaact 661 ccaagtccca gcttctcaac gccgtcctca gcccgggcca caggcagtgg gactgcttct 721 ggcatcggga cctcaacttg ggcaccaatg cccgggagat ttcggatggg ttggtagaaa 781 tttcctggtt ttttcccagc ggaagggagg acttggacat tttcccagaa cctgtggcct 841 ttctgaacct gagaggtgac atcgggtctc actggctgca gtttaagctc ttgacagaaa 901 tctcctccgc tgtgtttata ttgactgaca atatcagtaa gaaggaatac aaattgctgt 961 actccatgaa ggagtcaacc acaaaatact acttcatcct gagtccctac cgtgggaagc 1021 gcaacacaaa cctgagattt ctgaataagt taattcctgt gctgaaaata gaccactcac 1081 atgtcctggt aaaggtcagc agcactgaca gcgacagctt cgtgaagagg atccgggcca 1141 tcgttgggaa tgtgctgcgg gcaccctgca ggcgggtatc tgtggaggac atggcgcacg 1201 cagcccgcaa actgggccta aaggtcgacg aggactgtga ggagtgtcag aaagcgaaag 1261 accggatgga gaggattacc aggaaaatca aagactcgga tgcctacaga agggacgagc 1321 tgaggctgca gggggacccc tggagaaagg cagcccaagt ggagaaggag ttctgccagc 1381 tccagtgggc cgtggacccc cctgagaagc acagggctga gctgaggcgg cggctgctag 1441 aacttcgaat gcagcagaac ggccatgatc cctcctcggg ggtgcaggag ttcatctcgg 1501 ggatcagcag cccctccttg agtgagaagc agtacttcct gaggtggatg gagtggggcc 1561 tggcacgggt ggcccagccg cgactgagac agcctccgga gacgcttctc accctgagac 1621 caaagcacgg gggcaccaca gacgtggggg agccgctctg gcctgagccc ctaggggtgg 1681 aacacttctt gcgggagatg ggacagtttt atgaggctga gagctgtctt gtggaggcag 1741 ggaggctgcc ggcaggccag aggcgttttg cccacttccc aggcttggcc tcggagctgc 1801 tgctgacagg gctgcctctg gagctaatcg atgggagcac gctgagcatg cccgtccgct 1861 gggtcacagg gctcctgaag gagctgcatg tccgactgga gagacggtca aggctggtgg 1921 ttctgtcaac cgtcggggtg ccaggcacgg gcaagtccac actcctcaac accatgtttg 1981 ggctgcggtt tgccacaggg aagagctgcg gtcctcgagg ggccttcatg cagctcatca 2041 cagtggctga gggcttcagc caggacctgg gctgtgacca catcctggtg atagactccg 2101 ggggcttgat aggtggggcc ttgacgtcag ctggggacag atttgagctg gaggcttcct 2161 tggccactct gctcctggga ctgagcaatg tcaccgtgat cagtctagct gaaaccaagg 2221 acattccagc agctattctg catgcatttc TGAGGTTAGA AAAAACGGGG CACATGCCCA 2281 ACTACCAGTT TGTATACCAG AACCTTCATG ATGTATCTGT TCCCGGCCCT AGGCCCAGAG 2341 ACAAGAGACA GCTCCTGGAT CCACCTGGTG ACCTGAGCAG GGCTGCAGCC CAGATGGAGA 2401 AACAGGGCGA CGGCTTCCGG GCACTGGCAG GCCTGGCCTT CTGCGACCCT GAGAAGCAGC 2461 ACATCTGGCA CATCCCAGGC CTGTGGCACG GAGCACCTCC CATGGCCGCA GTGAGCTTGG 2521 CCTACAGTGA AGCCATATTT GAATTGAAGA GATGCCTACT CGAAAACATC AGGAACGGCT 2581 TGTCGAACCA AAACAAAAAC ATCCAGCAGC TCATTGAGCT GGTGAGACGG CTGTGCCCAA 2641 CTTTCTTGTA CAAAGTGGTT GATATCGGTA AGCCTATCCC TAACCCTCTC CTCGGTCTCG 2701 ATTCTACGTA GTAATGAACT AGTCCGTAAC TTGAAAGTAT TTCGATTTCT TGGCTTTATA 2761 TATCTTGTGG AAAGGACGAC GCTGCTTCGA GTCATTATCG TTGACGCGTT AAGTCgacaa 2821 tcaacctctg gattacaaaa tttgtgaaag att