Transcript: Mouse XM_006514814.3

PREDICTED: Mus musculus upregulator of cell proliferation (Urgcp), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Urgcp (72046)
Length:
3958
CDS:
602..3253

Additional Resources:

NCBI RefSeq record:
XM_006514814.3
NBCI Gene record:
Urgcp (72046)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006514814.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000445870 TGAACTTGAGAGGTGACATTG pLKO_005 1476 CDS 100% 10.800 15.120 N Urgcp n/a
2 TRCN0000447813 TGCGCTCATGTACGGTGTATG pLKO_005 3718 3UTR 100% 10.800 15.120 N Urgcp n/a
3 TRCN0000192747 GCCCAACTATCAGTTTGTGTA pLKO.1 2908 CDS 100% 4.950 6.930 N Urgcp n/a
4 TRCN0000217819 CATTATGGAGATGGTACAAAC pLKO.1 626 CDS 100% 10.800 7.560 N Urgcp n/a
5 TRCN0000192464 CAGTTCAAGCTCTTGACAGAA pLKO.1 1511 CDS 100% 4.950 3.465 N Urgcp n/a
6 TRCN0000192110 CTCAGAGTTGATGAGGACTTT pLKO.1 1850 CDS 100% 4.950 3.465 N Urgcp n/a
7 TRCN0000189907 GCTGAAACAAAGGACATCCCA pLKO.1 2840 CDS 100% 0.750 0.525 N Urgcp n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006514814.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_12244 pDONR223 100% 79.9% 83.1% None (many diffs) n/a
2 ccsbBroad304_12244 pLX_304 0% 79.9% 83.1% V5 (many diffs) n/a
3 TRCN0000478939 CGCTGCTTCGAGTCATTATCGTTG pLX_317 15.2% 79.9% 83.1% V5 (many diffs) n/a
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