Construct: ORF TRCN0000478980
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002512.1_s317c1
- Derived from:
- ccsbBroadEn_15945
- DNA Barcode:
- CCCTTCCTAACATGTATGTAACCC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- KAT14 (57325)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000478980
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57325 | KAT14 | lysine acetyltransferase 14 | NM_020536.4 | 83.6% | 83.6% | 1_384del |
| 2 | human | 57325 | KAT14 | lysine acetyltransferase 14 | NR_028402.2 | 62.2% | 1_259del;2222_3152del | |
| 3 | mouse | 228714 | Kat14 | lysine acetyltransferase 14 | NM_001166640.1 | 86.8% | 94.6% | (many diffs) |
| 4 | mouse | 228714 | Kat14 | lysine acetyltransferase 14 | NM_181417.3 | 72.6% | 79.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2028
- ORF length:
- 1962
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgtt ggcaatgtac aacttgtctc tggaaggaag tggacgtcaa ggttatttca 121 ggtggaaaga agatatctgt gcttttattg agaaacattg gactttttta ctagggaata 181 ggaaaaagac gtctacctgg tggagcaccg tggcaggttg cctcagcgtg ggaagtccca 241 tgtacttccg ttcaggtgct caggaatttg gagagccagg atggtggaaa cttgttcata 301 acaagccccc aacgatgaaa cctgaaggag agaagttgtc tgcctctact ttgaaaataa 361 aagcagcctc aaaaccaact ttagatccca tcattactgt tgagggactt agaaaacgag 421 caagtcggaa tcctgtggaa tctgccatgg aattaaaaga gaaaaggtct cgaactcagg 481 aagcaaaaga cattagaaga gcccagaagg aggccgctgg ctttcttgac aggagcacat 541 cttctacccc tgtaaaattc ataagccgag gccgcaggcc agatgtgatt ctggaaaaag 601 gcgaagtgat tgacttttcc tccttgagct cctctgaccg caccccgctg acaagcccat 661 ctccttctcc ttctctggat ttctctgccc ctggtacacc tgcctctcat tctgccacac 721 ctagcttgct ttcagaagca gatctgattc cagatgtgat gcccccacaa gccttgtttc 781 atgatgacga tgagatggaa ggcgatggag tcatagaccc agggatggag tacgtcccac 841 cccctgctgg gtcagtagct tctgggccag tggttggggg cagaaagaag gtcagaggcc 901 ctgaacagat aaagcaggag gtagagagtg aggaggaaaa acccgacagg atggatattg 961 acagtgaaga cacagattca aacacatctt tgcaaacaag ggctagagaa aagaggaagc 1021 ctcagctgga gaaggacaca aagccgaaag agcccaggta tactcccgtg agcatctacg 1081 aggaaaagct gctgctcaag aggctggaag cttgtcccgg tgctgttgcc atgactccgg 1141 aagctcggag actgaaacgc aaactgattg tcagacaagc gaaaagggat aggggattac 1201 cactttttga cttggatcaa gttgttaatg ctgctctttt gttagttgac gggatttatg 1261 gagccaaaga aggaggaatt tccagacttc cagctggaca agccacgtac agaaccacct 1321 gtcaggactt cagaatcctt gaccgatacc agacttcctt gccgtccagg aagggatttc 1381 gacaccagac caccaagttt ttgtatcgct tggtaggatc agaagatatg gctgtggacc 1441 agagtattgt cagcccttat acctctcgga tcttgaaacc ttatatcagg cgtgattatg 1501 aaacaaagcc acccaaactg cagctcctgt cacagattcg ttcccacctg cacaggagcg 1561 accctcactg gacgccggag cccGACGCAC CTCTCGATTA CTGTTATGTG CGGCCAAATC 1621 ACATCCCAAC GATCAACTCC ATGTGTCAGG AGTTTTTTTG GCCTGGCATT GACCTGTCTG 1681 AGTGTCTGCA GTACCCAGAC TTCAGTGTTG TTGTTCTTTA TAAAAAAGTC ATCATTGCCT 1741 TTGGCTTCAT GGTTCCTGAT GTGAAATACA ATGAAGCTTA CATTTCATTT CTGTTCGTCC 1801 ACCCTGAATG GAGAAGAGCA GGGATTGCAA CTTTCATGAT CTATCATCTG ATTCAGACCT 1861 GCATGGGCAA GGACGTAACC CTTCACGTCT CAGCAAGCAA CCCCGCTATG CTACTGTACC 1921 AGAAGTTTGG ATTCAAGACT GAAGAATATG TATTAGATTT CTATGATAAA TATTACCCAT 1981 TGGAGAGTAC AGAGTGTAAA CACGCATTCT TTCTGAGGCT CCGGCGCTGC CCAACTTTCT 2041 TGTACAAAGT GGTTGATATC GGTAAGCCTA TCCCTAACCC TCTCCTCGGT CTCGATTCTA 2101 CGTAGTAATG AACTAGTCCG TAACTTGAAA GTATTTCGAT TTCTTGGCTT TATATATCTT 2161 GTGGAAAGGA CGACCCTTCC TAACATGTAT GTAACCCACG CGTTAAGTCg acaatcaacc 2221 tctggattac aaaatttgtg aaagatt