Construct: ORF TRCN0000479072
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014615.1_s317c1
- Derived from:
- ccsbBroadEn_15982
- DNA Barcode:
- CCAGGAACACAAGTTGTCCACGTA
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF343 (79175)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479072
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001282499.2 | 100% | 100% | |
| 2 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001321805.2 | 19.2% | 16.9% | (many diffs) |
| 3 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001282495.1 | 19.1% | 16.9% | (many diffs) |
| 4 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001282496.2 | 19.1% | 16.9% | (many diffs) |
| 5 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001321800.2 | 19.1% | 16.9% | (many diffs) |
| 6 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_024325.6 | 19.1% | 16.9% | (many diffs) |
| 7 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001321802.2 | 17.4% | 16% | (many diffs) |
| 8 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001321803.2 | 17.4% | 16% | (many diffs) |
| 9 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001282497.2 | 17.4% | 16% | (many diffs) |
| 10 | human | 79175 | ZNF343 | zinc finger protein 343 | NM_001321801.2 | 17.4% | 16% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 420
- ORF length:
- 354
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgat gttgccttat ccTTCAGCAC TGGGAGATCA ATACTGGGAA GAGATTTTGC 121 TTCCAAAGAA TGGGGAAAAT GTAGAGACTA TGAAGAAATT GACCCAAAAT CATAAAGCGA 181 AAGGCTTGCC TTCTAATGAT ACTGACTGCC CCCAGAAAAA GGAGGGAAAG GCCCAAATAG 241 TGGTACCAGT TACATTCAGG GATGTGACTG TGATCTTCAC AGAAGCAGAA TGGAAGAGAC 301 TGAGTCCAGA GCAGAGGAAT CTATACAAAG AAGTGATGCT GGAGAATTAC AGGAATCTTC 361 TCTCATTGGG TCAGGAGATC GAGACCATCC TGGCCAACAT AGTGAAATCC CATCTCTACT 421 ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 481 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTTCTTGGC 541 TTTATATATC TTGTGGAAAG GACGACCAGG AACACAAGTT GTCCACGTAA CGCGTTAAGT 601 Cgacaatcaa cctctggatt acaaaatttg tgaaagatt