Transcript: Human NM_001282495.1

Homo sapiens zinc finger protein 343 (ZNF343), transcript variant 2, mRNA.

Source:
NCBI, updated 2018-06-30
Taxon:
Homo sapiens (human)
Gene:
ZNF343 (79175)
Length:
3570
CDS:
415..2214

Additional Resources:

NCBI RefSeq record:
NM_001282495.1
NBCI Gene record:
ZNF343 (79175)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001282495.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000016817 GCAGCTAGACAAAGGCTTGAA pLKO.1 1086 CDS 100% 4.950 6.930 N ZNF343 n/a
2 TRCN0000318858 GCAGCTAGACAAAGGCTTGAA pLKO_005 1086 CDS 100% 4.950 6.930 N ZNF343 n/a
3 TRCN0000016813 GCCCAAATAGTGGTACCAGTT pLKO.1 580 CDS 100% 0.000 0.000 N ZNF343 n/a
4 TRCN0000318928 GCCCAAATAGTGGTACCAGTT pLKO_005 580 CDS 100% 0.000 0.000 N ZNF343 n/a
5 TRCN0000016815 GCCGAGGCTTTAGTCGGAAAT pLKO.1 1826 CDS 100% 10.800 7.560 N ZNF343 n/a
6 TRCN0000318859 GCCGAGGCTTTAGTCGGAAAT pLKO_005 1826 CDS 100% 10.800 7.560 N ZNF343 n/a
7 TRCN0000016814 CGGACCATAACCTGGAATCAA pLKO.1 1157 CDS 100% 5.625 3.938 N ZNF343 n/a
8 TRCN0000016816 CTATGAAGAAATTGACCCAAA pLKO.1 497 CDS 100% 4.050 2.835 N ZNF343 n/a
9 TRCN0000318857 CTATGAAGAAATTGACCCAAA pLKO_005 497 CDS 100% 4.050 2.835 N ZNF343 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001282495.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15146 pDONR223 69% 99.7% 99.4% None 1205T>C;1778_1779delTCinsGA;1781G>A n/a
2 ccsbBroad304_15146 pLX_304 0% 99.7% 99.4% V5 1205T>C;1778_1779delTCinsGA;1781G>A n/a
3 TRCN0000469065 CGCCTTGTCACGCTGGTATCGCTA pLX_317 27% 67.2% 67.1% V5 1205T>C;1210_1797del n/a
4 ccsbBroadEn_15982 pDONR223 0% 19.1% 16.9% None (many diffs) n/a
5 ccsbBroad304_15982 pLX_304 0% 19.1% 16.9% V5 (many diffs) n/a
6 TRCN0000479072 CCAGGAACACAAGTTGTCCACGTA pLX_317 93% 19.1% 16.9% V5 (many diffs) n/a
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