Transcript: Human NM_001321801.2

Homo sapiens zinc finger protein 343 (ZNF343), transcript variant 8, mRNA.

Source:
NCBI, updated 2019-05-31
Taxon:
Homo sapiens (human)
Gene:
ZNF343 (79175)
Length:
3619
CDS:
353..2275

Additional Resources:

NCBI RefSeq record:
NM_001321801.2
NBCI Gene record:
ZNF343 (79175)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001321801.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000016817 GCAGCTAGACAAAGGCTTGAA pLKO.1 1147 CDS 100% 4.950 6.930 N ZNF343 n/a
2 TRCN0000318858 GCAGCTAGACAAAGGCTTGAA pLKO_005 1147 CDS 100% 4.950 6.930 N ZNF343 n/a
3 TRCN0000016813 GCCCAAATAGTGGTACCAGTT pLKO.1 518 CDS 100% 0.000 0.000 N ZNF343 n/a
4 TRCN0000318928 GCCCAAATAGTGGTACCAGTT pLKO_005 518 CDS 100% 0.000 0.000 N ZNF343 n/a
5 TRCN0000016815 GCCGAGGCTTTAGTCGGAAAT pLKO.1 1887 CDS 100% 10.800 7.560 N ZNF343 n/a
6 TRCN0000318859 GCCGAGGCTTTAGTCGGAAAT pLKO_005 1887 CDS 100% 10.800 7.560 N ZNF343 n/a
7 TRCN0000016814 CGGACCATAACCTGGAATCAA pLKO.1 1218 CDS 100% 5.625 3.938 N ZNF343 n/a
8 TRCN0000016816 CTATGAAGAAATTGACCCAAA pLKO.1 435 CDS 100% 4.050 2.835 N ZNF343 n/a
9 TRCN0000318857 CTATGAAGAAATTGACCCAAA pLKO_005 435 CDS 100% 4.050 2.835 N ZNF343 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001321801.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15146 pDONR223 69% 93.3% 93.1% None (many diffs) n/a
2 ccsbBroad304_15146 pLX_304 0% 93.3% 93.1% V5 (many diffs) n/a
3 TRCN0000469065 CGCCTTGTCACGCTGGTATCGCTA pLX_317 27% 62.9% 62.8% V5 304_426del;1328T>C;1333_1920del n/a
4 ccsbBroadEn_15982 pDONR223 0% 17.4% 16% None (many diffs) n/a
5 ccsbBroad304_15982 pLX_304 0% 17.4% 16% V5 (many diffs) n/a
6 TRCN0000479072 CCAGGAACACAAGTTGTCCACGTA pLX_317 93% 17.4% 16% V5 (many diffs) n/a
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