Construct: ORF TRCN0000479076

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF010296.1_s317c1
Derived from:
ccsbBroadEn_15562
DNA Barcode:
GACCCGACTCACAATTGGTGACGT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RBM4 (5936)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479076
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5936 RBM4 RNA binding motif protein 4 NM_001198843.1 100% 100%
2 human 83759 RBM4B RNA binding motif protein 4B NM_001286135.2 95.3% 95.1% (many diffs)
3 human 5936 RBM4 RNA binding motif protein 4 NM_001198844.2 82% 80.9% (many diffs)
4 human 5936 RBM4 RNA binding motif protein 4 NM_002896.3 38.8% 38.4% (many diffs)
5 human 83759 RBM4B RNA binding motif protein 4B NM_031492.4 38.2% 38.4% (many diffs)
6 human 83759 RBM4B RNA binding motif protein 4B XM_011545297.3 38.2% 38.4% (many diffs)
7 human 83759 RBM4B RNA binding motif protein 4B XM_017018402.2 38.2% 38.4% (many diffs)
8 human 83759 RBM4B RNA binding motif protein 4B XR_247214.3 20.4% (many diffs)
9 human 83759 RBM4B RNA binding motif protein 4B XR_247213.3 19.6% (many diffs)
10 mouse 19653 Rbm4 RNA binding motif protein 4 NM_001290124.1 92.5% 98.6% (many diffs)
11 mouse 19653 Rbm4 RNA binding motif protein 4 NM_001290125.1 92.5% 98.6% (many diffs)
12 mouse 66704 Rbm4b RNA binding motif protein 4B XM_006531827.3 83.4% 88.3% (many diffs)
13 mouse 66704 Rbm4b RNA binding motif protein 4B NM_025717.3 36.8% 38.6% (many diffs)
14 mouse 66704 Rbm4b RNA binding motif protein 4B XM_006531823.3 36.8% 38.6% (many diffs)
15 mouse 66704 Rbm4b RNA binding motif protein 4B XM_006531824.3 36.8% 38.6% (many diffs)
16 mouse 66704 Rbm4b RNA binding motif protein 4B XM_006531825.3 36.8% 38.6% (many diffs)
17 mouse 66704 Rbm4b RNA binding motif protein 4B XM_006531826.2 36.8% 38.6% (many diffs)
18 mouse 19653 Rbm4 RNA binding motif protein 4 NM_001290122.1 36.2% 38.2% (many diffs)
19 mouse 19653 Rbm4 RNA binding motif protein 4 NM_001290123.1 36.2% 38.2% (many diffs)
20 mouse 19653 Rbm4 RNA binding motif protein 4 NM_009032.3 36.2% 38.2% (many diffs)
21 mouse 102902673 Gm21992 predicted gene 21992 NM_001290127.1 27.4% 28.9% (many diffs)
22 mouse 66704 Rbm4b RNA binding motif protein 4B XR_001782610.1 6.9% (many diffs)
23 mouse 66704 Rbm4b RNA binding motif protein 4B XR_001782611.1 5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
495
ORF length:
429
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt gaagctgttc atcggaaacc tgccccggga ggctacagag caggagattc
121gctcacTCTT CGAGCAGTAT GGGAAGGTGC TGGAATGTGA CATCATTAAG AATTACGGCT
181TTGTGCACAT AGAAGACAAG ACGGCAGCTG AGGATGCCAT ACGCAACCTG CACCATTACA
241AGCTTCATGG GGTGAACATC AACGTGGAAG CCAGCAAGAA TAAGAGCAAA ACCTCAACAA
301AGTTGCATGT GGGCAACATC AGTCCCACCT GCACCAATAA GGAGCTTCGA GCCAAGTTTG
361AGGAGTATGG TCCGGTCATC GAATGTGACA TCGTGAAAGA TTATGCCTTC GTACACATGG
421AGCGGGCAGA GGATGCAGTG GAGGCCATCA GGGGCCTTGA TAACACAGAG TTTCAAGGTG
481GGATGTGTGT GGGCTGCCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
541CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
601TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA GACCCGACTC ACAATTGGTG
661ACGTACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)