Construct: ORF TRCN0000479084
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005729.2_s317c1
- Derived from:
- ccsbBroadEn_14220
- DNA Barcode:
- TAAATGGTGCTGGCTGTGTTTTAT
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- TM9SF3 (56889)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479084
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 56889 | TM9SF3 | transmembrane 9 superfamily... | NM_020123.4 | 77.5% | 77.2% | (many diffs) |
| 2 | human | 56889 | TM9SF3 | transmembrane 9 superfamily... | XM_011539976.2 | 75.2% | 74.9% | (many diffs) |
| 3 | human | 56889 | TM9SF3 | transmembrane 9 superfamily... | XM_011539977.1 | 68.5% | 61.1% | (many diffs) |
| 4 | mouse | 107358 | Tm9sf3 | transmembrane 9 superfamily... | NM_133352.2 | 71.8% | 77.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1440
- ORF length:
- 1374
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgca catagatgat ttaccaatat ggggtattgt tggtgaggct gatgaaaatg 121 gagaagatta ctatctttgg acctataaaa aacttgaaat aggttttaat ggaaatcgaa 181 ttgttgatgt taatctaact agtgaaggaa aggtgaaact ggttccaaat actaaaatcc 241 agatgtcata ttcagtaaaa tggaaaaagt cagatgtgaa atttgaagat cgatttgaca 301 aatatcttga tccgtccttt tttcaacatc ggattcattg gttttcaatt ttcaactcct 361 tcatgatggt gatcttcttg gtgggcttag tttcaatgat tttaatgaga acattaagaa 421 aagattatgc tcggtacagt aaagaggaag aaatggatga tatggataga gacctaggag 481 atgaatatgg atggaaacag gtgcatggag atgtatttag accatcaagt cacccactga 541 tattttcctc tctgattggt tctggatgtc agatatttgc tgtgtctctc atcgttatta 601 ttgttgcaat gatagaagat ttatatactg agaggggatc aatgctcagt acagccatat 661 ttgtctatgc tgctacgtct ccagtgaatg gttattttgg aggaagtctg tatgctagac 721 aaggaggaag gagatggata aagcagatgt ttattggggc attccttatc ccagctatgg 781 tgtgtggcac tgccttcttc atcaatttca tagccattta ttaccatgct tcaagagcca 841 ttccttttgg aacaatggtg gccgtttgtt gcatctgttt ttttgttatt cttcctctaa 901 atcttgttgg tacaatactt ggccgaaatc tgtcaggtca gcccaacttt ccttgtcgtg 961 tcaatgctgt gcctcgtcct ataccggaga aaaaatggtt catggagcct gcggttattg 1021 tttgcctggg tggaatttta CCTTTTGGTT CAATCTTTAT TGAAATGTAT TTCATCTTCA 1081 CGTCTTTCTG GGCATATAAG ATCTATTATG TCTATGGCTT CATGATGCTG GTGCTGGTTA 1141 TCCTGTGCAT TGTGACTGTC TGTGTGACTA TTGTGTGCAC ATATTTTCTA CTAAATGCAG 1201 AAGATTACAG GTGGCAATGG ACAAGTTTTC TCTCTGCTGC ATCAACTGCA ATCTATGTTT 1261 ACATGTATTC CTTTTACTAC TATTTTTTCA AAACAAAGAT GTATGGCTTA TTTCAAACAT 1321 CATTTTACTT TGGATATATG GCGGTATTTA GCACAGCCTT GGGGATAATG TGTGGAGCGA 1381 TTGGTTACAT GGGAACAAGT GCCTTTGTCC GAAAAATCTA TAGTCATGTG AAAATTGACT 1441 ACCCAACTTT CTTGTACAAA GTGGTTGATA TCGGTAAGCC TATCCCTAAC CCTCTCCTCG 1501 GTCTCGATTC TACGTAGTAA TGAACTAGTC CGTAACTTGA AAGTATTTCG ATTCTTGGCT 1561 TTATATATCT TGTGGAAAGG ACGATAAATG GTGCTGGCTG TGTTTTATAC GCGTTAAGTC 1621 gacaatcaac ctctggatta caaaatttgt gaaagatt