Construct: ORF TRCN0000479133
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015623.1_s317c1
- Derived from:
- ccsbBroadEn_11683
- DNA Barcode:
- TTCGCCAACCGCTTCTTCAACTAC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- EPB41L3 (23136)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479133
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
---|---|---|---|---|---|---|---|---|
1 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025660.2 | 16.1% | 16.1% | 364_2250del |
2 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | NM_001281535.1 | 16% | 16% | 364_2268del |
3 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025659.2 | 16% | 16% | 364_2268del |
4 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025658.2 | 15.8% | 15.8% | 364_2292del |
5 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025657.2 | 15.7% | 15.7% | 364_2304del |
6 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025656.2 | 15.6% | 15.6% | 364_2322del |
7 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025655.2 | 15.5% | 15.5% | 364_2337del |
8 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025654.2 | 15.4% | 15.4% | 364_2346del |
9 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025653.2 | 15.3% | 15.3% | 364_2367del |
10 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025652.2 | 15.2% | 15.2% | 364_2373del |
11 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025651.2 | 15.1% | 15.1% | 364_2391del |
12 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025650.2 | 14.9% | 14.9% | 364_2421del |
13 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025648.2 | 14.9% | 14.9% | 364_2427del |
14 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025649.2 | 14.8% | 14.8% | 364_2448del |
15 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025641.2 | 14.7% | 14.7% | 1_327del;691_2460del |
16 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025647.2 | 14.7% | 14.7% | 364_2466del |
17 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025638.2 | 14.5% | 14.5% | 1_327del;691_2490del |
18 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025645.2 | 14.5% | 14.5% | 364_2502del |
19 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025646.2 | 14.4% | 14.4% | 1_327del;691_2514del |
20 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025634.2 | 14.3% | 14.3% | 1_327del;691_2526del |
21 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025635.2 | 14.3% | 14.3% | 1_327del;691_2526del |
22 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_011525637.3 | 14.2% | 14.2% | 1_327del;691_2541del |
23 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025644.2 | 14.2% | 14.2% | 1_327del;691_2541del |
24 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025643.2 | 14.2% | 14.2% | 1_327del;691_2550del |
25 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025631.2 | 14.1% | 14.1% | 1_327del;691_2559del |
26 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | NM_001281534.2 | 13.9% | 13.9% | 1_327del;691_2595del |
27 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025642.2 | 13.9% | 13.9% | 1_327del;691_2595del |
28 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025640.2 | 13.9% | 13.9% | 1_327del;691_2607del |
29 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025626.2 | 13.8% | 13.8% | 1_327del;691_2613del |
30 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025639.2 | 13.8% | 13.8% | 1_327del;691_2619del |
31 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025624.2 | 13.8% | 13.8% | 1_327del;691_2625del |
32 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025637.2 | 13.7% | 13.7% | 1_327del;691_2631del |
33 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025623.2 | 13.7% | 13.7% | 1_327del;691_2637del |
34 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_011525634.3 | 13.7% | 13.7% | 1_327del;691_2643del |
35 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | NM_001281533.1 | 13.7% | 13.7% | 1_327del;691_2649del |
36 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025636.2 | 13.7% | 13.7% | 1_327del;691_2649del |
37 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025621.2 | 13.6% | 13.6% | 1_327del;691_2664del |
38 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025620.2 | 13.5% | 13.5% | 1_327del;691_2670del |
39 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025632.2 | 13.5% | 13.5% | 1_327del;691_2673del |
40 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025633.2 | 13.5% | 13.5% | 1_327del;691_2673del |
41 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025619.2 | 13.5% | 13.5% | 1_327del;691_2688del |
42 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025629.2 | 13.4% | 13.4% | 1_327del;691_2700del |
43 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025630.2 | 13.4% | 13.4% | 1_327del;691_2700del |
44 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_011525632.3 | 13.4% | 13.4% | 1_327del;691_2706del |
45 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025618.2 | 13.3% | 13.3% | 1_327del;691_2712del |
46 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025628.2 | 13.3% | 13.3% | 1_327del;691_2718del |
47 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025627.2 | 13.2% | 13.2% | 1_327del;691_2748del |
48 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | NM_001330557.1 | 13.1% | 13.1% | 1_327del;691_2754del |
49 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025625.2 | 13.1% | 13.1% | 1_327del;691_2754del |
50 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_017025622.2 | 13% | 13% | 1_327del;691_2775del |
51 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_011525626.3 | 12.9% | 12.9% | 1_327del;691_2793del |
52 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | XM_011525623.3 | 12.8% | 12.8% | 1_327del;691_2829del |
53 | human | 23136 | EPB41L3 | erythrocyte membrane protei... | NM_012307.4 | 11.1% | 11.1% | 1_327del;691_3261del |
54 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249495.1 | 13.7% | 15.4% | (many diffs) |
55 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | NM_001355732.1 | 13.1% | 14.7% | (many diffs) |
56 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_011246290.1 | 12.8% | 14.4% | (many diffs) |
57 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_017317239.2 | 12.8% | 14.4% | (many diffs) |
58 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249494.1 | 12.7% | 14.2% | (many diffs) |
59 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249486.1 | 12.5% | 14% | (many diffs) |
60 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249492.1 | 12.4% | 13.9% | (many diffs) |
61 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249491.1 | 12.2% | 13.6% | (many diffs) |
62 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_011246288.1 | 12.1% | 13.6% | (many diffs) |
63 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_017317238.1 | 11.9% | 13.3% | (many diffs) |
64 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249490.1 | 11.9% | 13.3% | (many diffs) |
65 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249489.1 | 11.8% | 13.2% | (many diffs) |
66 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249488.1 | 11.7% | 13.1% | (many diffs) |
67 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249484.1 | 11.7% | 13.1% | (many diffs) |
68 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249487.1 | 11.7% | 13% | (many diffs) |
69 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_017317234.1 | 11.6% | 13% | (many diffs) |
70 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_017317232.1 | 11.5% | 12.8% | (many diffs) |
71 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | NM_001355733.1 | 11.4% | 12.8% | (many diffs) |
72 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249485.1 | 11.4% | 12.8% | (many diffs) |
73 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249483.1 | 11.4% | 12.7% | (many diffs) |
74 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | NM_001355736.1 | 11.2% | 12.5% | (many diffs) |
75 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | NM_013813.2 | 11.2% | 12.5% | (many diffs) |
76 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249481.1 | 11.1% | 12.5% | (many diffs) |
77 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_017317231.1 | 11.1% | 12.4% | (many diffs) |
78 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249480.1 | 11% | 12.3% | (many diffs) |
79 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249479.1 | 10.9% | 12.2% | (many diffs) |
80 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_011246285.1 | 10.5% | 11.8% | (many diffs) |
81 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249482.1 | 10.5% | 11.8% | (many diffs) |
82 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249478.1 | 9.9% | 11.1% | (many diffs) |
83 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_011246284.1 | 9.9% | 11.1% | (many diffs) |
84 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249477.1 | 9.7% | 10.9% | (many diffs) |
85 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_011246283.1 | 9.6% | 10.7% | (many diffs) |
86 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | NM_001355735.1 | 9.6% | 10.7% | (many diffs) |
87 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_011246281.1 | 9.5% | 10.7% | (many diffs) |
88 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249476.1 | 9.5% | 10.7% | (many diffs) |
89 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | NM_001355734.1 | 9.4% | 10.5% | (many diffs) |
90 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249475.1 | 9.3% | 10.4% | (many diffs) |
91 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_011246279.1 | 9.2% | 10.3% | (many diffs) |
92 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_011246278.1 | 9% | 10.1% | (many diffs) |
93 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249474.1 | 8.1% | 9% | (many diffs) |
94 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_006523618.4 | 8% | 8.9% | (many diffs) |
95 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_017317227.2 | 7.4% | 8.3% | (many diffs) |
96 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249472.1 | 7.4% | 8.3% | (many diffs) |
97 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_030249473.1 | 7.4% | 8.3% | (many diffs) |
98 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_006523612.4 | 7.3% | 8.2% | (many diffs) |
99 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_006523613.3 | 7.3% | 8.2% | (many diffs) |
100 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_006523614.4 | 7.3% | 8.2% | (many diffs) |
101 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_006523615.3 | 7.3% | 8.2% | (many diffs) |
102 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_006523616.4 | 7.3% | 8.2% | (many diffs) |
103 | mouse | 13823 | Epb41l3 | erythrocyte membrane protei... | XM_006523611.4 | 7.2% | 8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 81
- ORF end:
- 444
- ORF length:
- 363
- Sequence:
-
1 GGTTCAAAGT TTTTTTCTTC CATTTCAGGT GTCGTGAGGC TAGCATCGAT TGATCAACAA 61 GTTTGTACAA AAAAGTTGGC ATGCAGTGCA AAGTGATACT TCTCGATGGA TCAGAATATA 121 CCTGTGATGT AGAGAAACGC TCCAGAGGAC AAGTGCTGTT TGATAAAGTG TGTGAACACT 181 TGAACTTGCT AGAGAAAGAC TACTTTGGGC TTACGTATCG AGATGCTGAA AACCAGAAGA 241 ATTGGTTGGA CCCTGCTAAG GAAATAAAAA AACAGGTTCG AAGTGGTGCT TGGCACTTTT 301 CATTTAATGT GAAATTTTAT CCACCAGACC CTGCCCAACT ATCTGAAGAT ATCACCAGGT 361 ACTACCTCTG CTTGCAGTTG CGAGATGACA TCGTGTCCGG AAGGCTGCCC TGCTCCTTTG 421 TTACCCTGGC CTTGCTGGGC TCCTACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA 481 AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC 541 TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAT TCGCCAACCG 601 CTTCTTCAAC TACACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag 661 att