Construct: ORF TRCN0000479135

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014207.1_s317c1
Derived from:
ccsbBroadEn_12498
DNA Barcode:
GCCTACTGAAACCAAATCGAGGTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FBXL17 (64839)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479135
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 64839 FBXL17 F-box and leucine rich repe... NM_001163315.3 43.2% 43.2% 1_1194del
2 human 64839 FBXL17 F-box and leucine rich repe... XM_005272048.4 38.1% 36.4% (many diffs)
3 human 64839 FBXL17 F-box and leucine rich repe... XM_011543574.3 31.1% 30.2% (many diffs)
4 human 64839 FBXL17 F-box and leucine rich repe... XM_011543575.2 30.9% 30% (many diffs)
5 human 64839 FBXL17 F-box and leucine rich repe... XM_011543576.3 29.5% 27.2% (many diffs)
6 human 64839 FBXL17 F-box and leucine rich repe... XM_011543577.2 26.8% 26.2% (many diffs)
7 human 64839 FBXL17 F-box and leucine rich repe... XM_011543578.2 26.2% 26.2% 1_1194del;1746_1746delAins358
8 human 64839 FBXL17 F-box and leucine rich repe... XM_017009729.2 23% 20.9% (many diffs)
9 human 64839 FBXL17 F-box and leucine rich repe... XM_011543579.2 16% 14.9% (many diffs)
10 human 64839 FBXL17 F-box and leucine rich repe... XM_011543580.2 16% 14.9% (many diffs)
11 human 64839 FBXL17 F-box and leucine rich repe... XM_005272050.4 14.9% 14.9% (many diffs)
12 mouse 50758 Fbxl17 F-box and leucine-rich repe... NM_015794.1 39.8% 42.2% (many diffs)
13 mouse 50758 Fbxl17 F-box and leucine-rich repe... XR_385343.3 6.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
978
ORF length:
909
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gtctgataat ggcgtatgtg ttttagcatt taaatgtcct ggacttctta
121ggtatacagc ctacaggtgt aaacagcttt ctgacacctc tattattgcg gttgcctctc
181actgtccttt acttcagaaa gtgcatgtag gcaaccagga caaactcact gatgaaggac
241tcaagcagct gggctcaaaa tgcagagaac tcaaagatat tcatttcggc cagtgttaca
301agatctcaga tgaaggcatg atcgtcatag ctaagggctg tctgaaatta caaaggatat
361acatgcagga aaacaaatta gtgacagatc agtcagtgaa agcatttgct gaacactgtc
421ctgagcttca atatgtaggc ttcatgggtt gttcagtcac ttctaaagga gtcattcacc
481taaccaagct aagaaacctt tccagcttgg acctacgtca tatcactgaa ctggataatG
541AAACCGTGAT GGAAATTGTC AAGAGGTGCA AAAATCTTAG CTCTCTCAAT CTCTGTCTGA
601ACTGGATCAT AAATGACAGG TGTGTGGAGG TCATTGCAAA GGAAGGACAA AACCTGAAAG
661AGCTATATTT GGTGTCCTGT AAAATCACAG ATTATGCACT GATAGCCATT GGGCGATACA
721GCATGACAAT AGAGACTGTG GATGTCGGAT GGTGTAAAGA AATCACAGAC CAAGGAGCCA
781CCCTGATTGC ACAGAGCAGC AAGTCTCTGA GATATTTGGG GCTGATGAGA TGTGATAAAG
841TCAACGAAGT GACGGTGGAA CAGCTGGTGC AGCAGTACCC CCACATCACC TTCAGCACCG
901TCCTGCAGGA CTGCAAGAGG ACCTTGGAGA GAGCCTATCA GATGGGCTGG ACCCCCAACA
961TGTCTGCCGC CTCCTCCTTG CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
1021TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
1081GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAGCCTACT GAAACCAAAT
1141CGAGGTCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)