Construct: ORF TRCN0000479174

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014903.1_s317c1
Derived from:
ccsbBroadEn_07502
DNA Barcode:
AGTTAAGCCATTGAGTCCCAAACC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
POM121 (9883)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479174
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9883 POM121 POM121 transmembrane nucleo... NM_172020.4 99.9% 100% 321G>C
2 human 9883 POM121 POM121 transmembrane nucleo... XM_006716196.3 99.9% 100% 321G>C
3 human 9883 POM121 POM121 transmembrane nucleo... XM_017012853.2 99.9% 100% 321G>C
4 human 9883 POM121 POM121 transmembrane nucleo... XM_017012854.2 99.9% 100% 321G>C
5 human 100101267 POM121C POM121 transmembrane nucleo... NM_001099415.3 98.3% 97.2% (many diffs)
6 human 9883 POM121 POM121 transmembrane nucleo... NM_001257190.3 96.6% 96.2% (many diffs)
7 human 9883 POM121 POM121 transmembrane nucleo... NM_001367610.1 93.9% 94% 321G>C;870_871ins177
8 human 9883 POM121 POM121 transmembrane nucleo... XM_005250726.4 78.7% 78.7% 1_795del;1116G>C
9 human 9883 POM121 POM121 transmembrane nucleo... XM_005250727.4 74% 74% 1_795del;1116G>C;1665_1666ins177
10 human 9883 POM121 POM121 transmembrane nucleo... XM_011516730.2 71% 71% 1_795del;1116G>C;1274_1275ins288
11 human 22932 POMZP3 POM121 and ZP3 fusion NM_152992.2 10% 8.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
3018
ORF length:
2952
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggt gtgtagccca gtgactgtga ggatcgcccc tcctgacaga agattttcgc
121gttctgcgat accagagcag ataatcagct caacactgtc ctcaccatca agtaacgccc
181cagacccatg tgcaaaggag acagtactga gtgccctcaa agagaaggag aagaaaagga
241cagtggagga agaagaccaa atattccttg atggccagga aaataaaaga aggcgccatg
301atagcagtgg cagtggacat tcagcatttg agcccctggt ggccaatgga gtccccgctt
361cttttgtgcc taagcctggg tctctcaaga gaggcctcaa ttctcagagc tcagatgacc
421acttgaataa gagatcccga agctcttcca tgagctcctt gacaggcgct tacgcaagtg
481gcatccctag ctccagccgc aatgccatta ccagttccta cagctccact cgaggcatct
541cacagctctg gaagagaaat ggccccagtt catcaccctt ctctagccca gcctcctccc
601gctcccagac accggagagg ccagcaaaga aaataagaga agaggagctg tgtcatcatt
661ccagttcttc aactccattg gcagcagaca gggagtccca gggagaaaag gctgcagata
721caaccccaag gaagaaacaa aactcgaatt ctcagtctac acctggcagc tctgggcagc
781gtaagcggaa agttcagctg ctgccttctc ggcgagggga acagctgacc ttgcctccac
841ctccccagct tggctattcg atcactgccg aggacctaga cttagagaag aaggcttcat
901tacagtggtt caaccaggcc ttggaggaca agagcgatgc tgcctcgaac tctgtcactg
961agaccccacc tatcactcag ccttcattta cctttaccct gcctgctgct gcacctgcct
1021ccccacccac ctccctcctg gccccaagca ccaacccact gttagagagc ttgaagaaga
1081tgcagactcc cccgagcctg ccaccctgcc cagaatctgc tggagcagca accactgagg
1141ccctctcacc tccaaagaca cccagcctcc tacccccgct gggtttatca cagtcagggc
1201cgccagggct gctccccagc ccctcctttg actccaaacc cccgaccact ttgctggggc
1261tgatccctgc tccatccatg gtaccagcca ctgacaccaa ggcacctcca acccttcagg
1321cagagacggc taccaaaccc caagccacat ctgccccgtc ccccgccccc aagcaaagct
1381tcctgtttgg aacacagaac acctcacctt ccagccctgc cgcccctgct gcatcttcag
1441cacctcccat gttcaagccc attttcacgg ctccacccaa gagtgagaag gaaggcccca
1501caccgcctgg cccttcagtc acagccacag cgccctccag ctcctccctc cccacgacca
1561ccagcaccac agccccgacc ttccagcctg tctttagcag catggggcca cctgcatctg
1621tgcccttgcc tgctcccttc ttcaagcaga caactactcc cgccactgct cccaccacaa
1681ctgccccgct cttcactggc ctggccagcg ccacctctgc tgtggctccc atcacctctg
1741ccagtccatc cacagactct gcttcgaagc ctgcgtttgg ctttggcata aacagtgtga
1801gcagcagcag tgtgagtacc acgaccagca ccgccactgc cgcctcacag cctttcctct
1861tcggggcgcc ccaggcctct gctgccagct tcaccccggc catgggctcc atattccagt
1921ttggcaaacc tcctgccttg cccacaacca ccacagtcac caccttcagc cagtccctgc
1981acactgccgt gccaacggcc accagcagca gcgctgccga ctttagtggt tttggcagca
2041ccctcgccac ctccgccccg gccaccagca gccagcccac tctgacgttc agtaacacga
2101gcacccccac gttcaacatt ccctttggct caagcgccaa gtccccgctc ccatcatatc
2161cgggagccaa cccccagccc gcatttgggg ccgctgaggg gcagccaccg ggggccgcca
2221agccggccct tgcccccagc tttggcagct ctttcacttt tggaaactct gcagccccgg
2281ctgctgcacc cacacctgca cctccgtcca tgatcaaggt cgtgcctgcg tacgtgccta
2341cgcccatcca tcctatcttt ggcggtgcca cgcactcggc gtttgggttg aaagccacgg
2401cttcggcctt cggcgctccc gccagctcac agcccgcctt tggcggctcc actgctgtct
2461tcttcggtgc agccaccagc tccggctttg gagccaccac ccagaccgcc agcagcggga
2521gcagcagctc ggtgtttggc agcacaacac catcaccctt cacgtttggg ggttcggcag
2581cccccgctgg cagtgggagc tttgggatca atgtggccac cccaggctcc agcaccacca
2641ccggagcttt cagctttgga gcaggacaga gtgggagcac agccacctcc acccccTTCG
2701CAGGGGGCTT AGGTCAGAAC GCCCTGGGCA CCACCGGCCA GAGCACACCG TTTGCCTTCA
2761ACGTGAGCAG CACAACTGAG AGCAAACCTG TGTTTGGAGG CACCGCCACC CCCACCTTTG
2821GTCTGAACAC CCCTGCGCCT GGAGTGGGCA CATCAGGCAG CAGCCTCTCC TTTGGGGCAT
2881CCTCAGCACC CGCCCAAGGC TTTGTTGGTG TTGCACCTTT CGGATCGGCG GCCCTTTCAT
2941TTTCCATTGG TGCGGGATCC AAGACCCCAG GGGCTCGACA GCGACTGCAG GCCCGAAGGC
3001AGCACACCCG CAAAAAGTAC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA
3061TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA
3121GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAAGTTAAG CCATTGAGTC
3181CCAAACCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt

Download FASTA (ORF) (Full)