Construct: ORF TRCN0000479200
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF002743.1_s317c1
- Derived from:
- ccsbBroadEn_02607
- DNA Barcode:
- CCTTTGAACGACAGGCACATGCAG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- WWP1 (11059)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479200
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 11059 | WWP1 | WW domain containing E3 ubi... | NM_007013.4 | 100% | 100% | |
| 2 | human | 11059 | WWP1 | WW domain containing E3 ubi... | XM_005250760.4 | 100% | 100% | |
| 3 | human | 11059 | WWP1 | WW domain containing E3 ubi... | XM_005250761.4 | 99.8% | 99.7% | 472_473insTAG |
| 4 | human | 11059 | WWP1 | WW domain containing E3 ubi... | XM_017012993.1 | 99.8% | 99.7% | 472_473insTAG |
| 5 | human | 11059 | WWP1 | WW domain containing E3 ubi... | XM_017012994.2 | 97.3% | 97.3% | 1674_1675ins72 |
| 6 | human | 11059 | WWP1 | WW domain containing E3 ubi... | XM_024447056.1 | 97.3% | 97.3% | 1674_1675ins72 |
| 7 | human | 11059 | WWP1 | WW domain containing E3 ubi... | XM_017012995.2 | 80.5% | 80.4% | 0_1ins537;2T>G |
| 8 | human | 11059 | WWP1 | WW domain containing E3 ubi... | XM_017012996.1 | 80.5% | 80.4% | 0_1ins537;2T>G |
| 9 | human | 11059 | WWP1 | WW domain containing E3 ubi... | XM_017012997.2 | 77.9% | 77.8% | 0_1ins537;2T>G;1137_1138ins72 |
| 10 | human | 11059 | WWP1 | WW domain containing E3 ubi... | XR_001745464.2 | 61.3% | 1_267del;1944_1954del;3045_4508del | |
| 11 | mouse | 107568 | Wwp1 | WW domain containing E3 ubi... | NM_177327.5 | 89.9% | 90.5% | (many diffs) |
| 12 | mouse | 107568 | Wwp1 | WW domain containing E3 ubi... | XM_006537545.3 | 83.2% | 83.1% | (many diffs) |
| 13 | mouse | 107568 | Wwp1 | WW domain containing E3 ubi... | NM_001276292.1 | 77.2% | 73% | (many diffs) |
| 14 | mouse | 107568 | Wwp1 | WW domain containing E3 ubi... | XM_006537546.3 | 66% | 67.3% | (many diffs) |
| 15 | mouse | 107568 | Wwp1 | WW domain containing E3 ubi... | NR_074090.1 | 37% | (many diffs) | |
| 16 | mouse | 107568 | Wwp1 | WW domain containing E3 ubi... | NR_074089.1 | 34.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2832
- ORF length:
- 2766
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatggc cactgcttca ccaaggtctg atactagtaa taaccacagt ggaaggttgc 121 agttacaggt aactgtttct agtgccaaac ttaaaagaaa aaagaactgg ttcggaacag 181 caatatatac agaagtagtt gtagatggag aaattacgaa aacagcaaaa tccagtagtt 241 cttctaatcc aaaatgggat gaacagctaa ctgtaaatgt tacgccacag actacattgg 301 aatttcaagt ttggagccat cgcactttaa aagcagatgc tttattagga aaagcaacga 361 tagatttgaa acaagctctg ttgatacaca atagaaaatt ggaaagagtg aaagaacaat 421 taaaactttc cttggaaaac aagaatggca tagcacaaac tggtgaattg acagttgtgc 481 ttgatggatt ggtgattgag caagaaaata taacaaactg cagctcatct ccaaccatag 541 aaatacagga aaatggtgat gccttacatg aaaatggaga gccttcagca aggacaactg 601 ccaggttggc tgttgaaggc acgaatggaa tagataatca tgtacctaca agcactctag 661 tccaaaactc atgctgctcg tatgtagtta atggagacaa cacaccttca tctccgtctc 721 aggttgctgc cagacccaaa aatacaccag ctccaaaacc actcgcatct gagcctgccg 781 atgacactgt taatggagaa tcatcctcat ttgcaccaac tgataatgcg tctgtcacgg 841 gtactccagt agtgtctgaa gaaaatgcct tgtctccaaa ttgcactagt actactgttg 901 aagatcctcc agttcaagaa atactgactt cctcagaaaa caatgaatgt attccttcta 961 ccagtgcaga attggaatct gaagctagaa gtatattaga gcctgacacc tctaattcta 1021 gaagtagttc tgcttttgaa gcagccaaat caagacagcc agatgggtgt atggatcctg 1081 tacggcagca gtctgggaat gccaacacag aaaccttgcc atcagggtgg gaacaaagaa 1141 aagatcctca tggtagaacc tattatgtgg atcataatac tcgaactacc acatgggaga 1201 gaccacaacc tttacctcca ggttgggaaa gaagagttga tgatcgtaga agagtttatt 1261 atgtggatca taacaccaga acaacaacgt ggcagcggcc taccatggaa tctgtccgaa 1321 attttgaaca gtggcaatct cagcggaacc aattgcaggg agctatgcaa cagtttaacc 1381 aacgatacct ctattcggct tcaatgttag ctgcagaaaa tgacccttat ggacctttgc 1441 caccaggctg ggaaaaaaga gtggattcaa cagacagggt ttactttgtg aatcataaca 1501 caaaaacaac ccagtgggaa gatccaagaa ctcaaggctt acagaatgaa gaacccctgc 1561 cagaaggctg ggaaattaga tatactcgtg aaggtgtaag gtactttgtt gatcataaca 1621 caagaacaac aacattcaaa gatcctcgca atgggaagtc atctgtaact aaaggtggtc 1681 cacaaattgc ttatgaacgc ggctttaggt ggaagcttgc tcacttccgt tatttgtgcc 1741 agtctaatgc actacctagt catgtaaaga tcaatgtgtc ccggcagaca ttgtttgaag 1801 attccttcca acagattatg gcattaaaac cctatgactt gaggaggcgc ttatatgtaa 1861 tatttagagg agaagaagga cttgattatg gtggcctagc gagagaatgg tttttcttgc 1921 tttcacatga agttttgaac ccaatgtatt gcttatttga gtatgcgggc aagaacaact 1981 attgtctgca gataaatcca gcatcaacca ttaatccaga ccatctttca tacttctgtt 2041 tcattggtcg ttttattgcc atggcactat ttcatggaaa gtttatcgat actggtttct 2101 ctttaccatt ctacaagcgt atgttaagta aaaaacttac tattaaggat ttggaatcta 2161 ttgatactga attttataac tcccttatct ggataagaga taacaacatt gaagaatgtg 2221 gcttagaaat gtacttttct gttgacatgg agattttggg aaaagttact tcacatgacc 2281 tgaagttggg aggttccaat attctggtga ctgaggagaa caaagatgaa tatattggtt 2341 taatgacaga atggcgtttt tctcgaggag tacaagaaca gaccaaagct ttccttgatg 2401 gttttaatGA AGTTGTTCCT CTTCAGTGGC TACAGTACTT CGATGAAAAA GAATTAGAGG 2461 TTATGTTGTG TGGCATGCAG GAGGTTGACT TGGCAGATTG GCAGAGAAAT ACTGTTTATC 2521 GACATTATAC AAGAAACAGC AAGCAAATCA TTTGGTTTTG GCAGTTTGTG AAAGAGACAG 2581 ACAATGAAGT AAGAATGCGA CTATTGCAGT TCGTCACTGG AACCTGCCGT TTACCTCTAG 2641 GAGGATTTGC TGAGCTCATG GGAAGTAATG GGCCTCAAAA GTTTTGCATT GAAAAAGTTG 2701 GCAAAGACAC TTGGTTACCA AGAAGCCATA CATGTTTTAA TCGCTTGGAT CTACCACCAT 2761 ATAAGAGTTA TGAACAACTA AAGGAAAAAC TTCTTTTTGC AATAGAAGAG ACAGAGGGAT 2821 TTGGACAAGA ATGCCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA 2881 ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT 2941 CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGACCT TTGAACGACA GGCACATGCA 3001 GACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t