Construct: ORF TRCN0000479218

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015367.1_s317c1
Derived from:
ccsbBroadEn_10455
DNA Barcode:
CCCCCAAGGATTTAACAAATGCCT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SYT11 (23208)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479218
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 23208 SYT11 synaptotagmin 11 NM_152280.5 99.7% 99.5% 144G>C;546T>C;1291T>A
2 human 23208 SYT11 synaptotagmin 11 XM_005245014.3 99.5% 99% (many diffs)
3 human 23208 SYT11 synaptotagmin 11 XM_017000759.2 99% 98.6% (many diffs)
4 mouse 229521 Syt11 synaptotagmin XI NM_018804.3 89.8% 95.1% (many diffs)
5 mouse 229521 Syt11 synaptotagmin XI XM_006501348.1 89.8% 95.1% (many diffs)
6 mouse 229521 Syt11 synaptotagmin XI XM_006501350.2 89.6% 94.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1359
ORF length:
1293
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaataag
61ttggcatggc tgagatcacc aatatccgac ctagctttga tgtgtcaccg gtggtggccg
121gcctcatcgg ggcctctgtg ctggtggtgt gtgtctcggt gaccgtcttt gtctggtcat
181gctgccacca gcaggcagag aagaagcaca agaacccacc atacaagttt attcacatgc
241tcaaaggcat cagcatatac ccagagaccc tcagcaacaa gaagaaaatc atcaaagtgc
301ggagagacaa agatggtcct gggagggaag gtggacgtag gaacctgttg gtggacgcag
361cagaggctgg cctgctaagc cgagacaaag atcccagggg gcctagctct ggatcttgta
421tagaccaatt acccatcaaa atggactatg gggaagaact aaggagccct attacaagcc
481tgacccctgg ggagagcaaa accacctctc catcatctcc agaggaggat gtcatgctag
541gatccctcac cttctcagtg gactataact tcccgaaaaa agccctggtg gtgacaatcc
601aggaggccca cgggctgcca gtgatggatg accagaccca gggatctgac ccctacatca
661aaatgaccat ccttcctgac aaacggcatc gggtgaagac cagagtgctg cggaagaccc
721tggaccctgt gtttgacgag accttcacct tctatggcat cccctacagc cagctgcagg
781acctggtgct gcacttcctt gtcctcagct ttgaccgctt ctctcgggat gatgtcattg
841gcgaggtcat ggtgccactg gcaggggtgg accccagcac aggcaaggta caactgacca
901gggacatcat caaaaggaat aTCCAGAAGT GCATCAGCAG AGGGGAGCTC CAGGTGTCTC
961TGTCATATCA GCCTGTGGCA CAGAGAATGA CAGTGGTGGT CCTCAAAGCC AGACACTTGC
1021CGAAGATGGA TATCACCGGT CTCTCAGGTA ATCCTTATGT CAAGGTGAAC GTCTACTACG
1081GCAGAAAGCG CATTGCCAAG AAGAAAACCC ATGTGAAGAA GTGCACTTTG AACCCCATCT
1141TCAATGAATC TTTCATCTAC GACATCCCCA CTGACCTCCT GCCTGATATC AGCATCGAGT
1201TCCTCGTTAT CGACTTCGAT CGCACCACCA AGAATGAGGT GGTGGGGAGG CTGATCCTGG
1261GGGCACACAG TGTCACAGCC AGTGGTGCTG AACACTGGAG AGAGGTCTGC GAGAGCCCCC
1321GCAAGCCTGT GGCCAAGTGG CACAGTCTGA GCGAGAACTA CCCAACTTTC TTGTACAAAG
1381TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
1441GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
1501ACGACCCCCA AGGATTTAAC AAATGCCTAC GCGTTAAGTC gacaatcaac ctctggatta
1561caaaatttgt gaaagatt

Download FASTA (ORF) (Full)