Construct: ORF TRCN0000479275

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007578.1_s317c1
Derived from:
ccsbBroadEn_09246
DNA Barcode:
TCCGCGGCCGAGTAGCCTACCATA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CGNL1 (84952)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479275
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 84952 CGNL1 cingulin like 1 NM_001252335.2 99.8% 99.7% (many diffs)
2 human 84952 CGNL1 cingulin like 1 NM_032866.5 99.8% 99.7% (many diffs)
3 human 84952 CGNL1 cingulin like 1 XM_017022686.1 99.8% 99.7% (many diffs)
4 human 84952 CGNL1 cingulin like 1 XM_005254726.4 99.8% 99.6% (many diffs)
5 human 84952 CGNL1 cingulin like 1 XM_005254727.5 99.8% 99.6% (many diffs)
6 human 84952 CGNL1 cingulin like 1 XM_011522120.1 99.8% 99.6% (many diffs)
7 human 84952 CGNL1 cingulin like 1 XM_011522121.2 99.8% 99.6% (many diffs)
8 human 84952 CGNL1 cingulin like 1 XM_017022685.1 99.8% 99.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3975
ORF length:
3906
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggagctgtat ttcggtgaat atcaacatgt gcagcaggaa tatggggtcc
121atctgagact cgcaagtgat gatacccaaa aatcaaggag ttcccagaac tccaaggcag
181gctcctacgg tgtcagtatt cgggtccagg gaattgatgg tcacccctat attgtcctga
241ataacacaga acggtgccta gcaggcacat cgttttctga aaatgggcca ccctttccac
301ctccagtgat aaataacctg cctctacatt ccagcaatgg ttctgtgcca aaggagaaca
361gtgaagaact tcagcttcca gaaaacccat acgcccagcc tagcccaata agaaacctga
421aacagcccct gctccatgag ggcaagaatg gagttctaga tcgcaaagac gggtctgtga
481agccatctca cctgctgaac tttcagaggc atccagagct tttgcaaccc tatgaccctg
541aaaagaatga gttgaattta caaaatcacc agccttctga gagtaattgg ctaaaaacgt
601tgacagaaga aggcatcaac aataagaagc cttggacttg ctttcccaaa cctagcaatt
661cccagcctac cagtccctcc ttggaagacc cggccaaatc tggtgtgaca gctattcgtt
721tatgcagctc cgtggtcata gaggacccca aaaagcagac ctcagtgtgt gtaaacgttc
781agagctgcac caaggagagg gtgggagagg aggccctttt cactagcggg aggcccctga
841ctgcccacag cccacatgcc caccctgaaa ccaagaaaac caggccagat gttcttccct
901tccggcgaca ggattcagcg ggacccgtcc tggatggagc tcggtcccgg aggtcctcct
961cgtcatccac aactcccacg tcagccaact ctttgtacag gtttttactg gatgatcagg
1021aatgtgccat ccatgccgac aacgtcaatc gtcatgaaaa cagaaggtat attcccttcc
1081tgccaggaac tggacgggat attgatacag gatcaattcc tggtgtggat cagttaattg
1141aaaaatttga tcaaaaacct gggcttcaga gaagaggaag gtctgggaag cgaaacagaa
1201ttaatccaga tgacaggaaa agatccagaa gcgtggatag cgcctttcct tttggcctcc
1261aagggaactc ggagtacctg attgaattca gtaggaactt gggcaagtca agcgaacacc
1321tcctccggcc ttcccaggtg tgcccgcagc ggccactgtc tcaggagcgc cgtgggaaac
1381agagcgtggg ccgcaccttt gcaaagctgc agggagcagc gcacggggct tcatgtgccc
1441acttcaggcc tccccagccg aacatagatg ggaaagttct ggaaaccgaa ggtagtcagg
1501aaagtacagt gatccgtgcg ccctcccttg gtgcacagag taaaaaggag gaggaggtga
1561aaacagccac cgctacgctg atgttacaga accgggcagc agcaacttcg cctgattctg
1621gtgccaagaa aatttccgtg aagacatttc cttcggcctc aaatactcag gccacaccgg
1681atctcttaaa gggccagcaa gagctcactc agcaaaccaa tgaggagaca gctaagcaga
1741ttctctacaa ttacctcaaa gaaggaagca ctgataatga cgatgctact aaaaggaaag
1801tcaacttggt ctttgagaaa atccagacct taaagtctcg agcagctggg agcgcccaag
1861gaaataacca agcttgtaat tccacatctg aagtcaaaga tctattggaa cagaaaagca
1921agttgaccat agaagtggct gaacttcaga gacagcttca actggaagtc aagaatcaac
1981agaacattaa agaagagaga gagaggatga gagcaaacct agaagagctc cgaagccaac
2041acaacgaaaa ggtggaggag aactccacat tgcagcaacg actggaagaa agtgaagggg
2101agctccggaa gaatctggag gagctattcc aggtgaagat ggaacgggag cagcatcaga
2161ctgagatcag ggatctccag gaccagctct cagaaatgca cgatgaactg gacagtgcaa
2221agcgatcgga ggacagggag aagggagctc tgattgagga gctcttacag gcaaaacagg
2281atcttcaaga tctgctgatt gccaaagagg agcaagaaga cctcttgaga aagcgagagc
2341gtgaactcac cgccctgaag ggagccctga aagaagaggt ttccagccat gatcaggaga
2401tggacaagct gaaggagcaa tatgatgctg agttgcaggc cctgagggag agtgtggaag
2461aagcaaccaa gaatgtcgag gtcttggcga gcaggagcaa cacttcagag caagaccagg
2521cggggactga aatgcgcgtg aagcttctgc aggaggagaa tgagaagctg cagggaagaa
2581gcgaagagct ggagcggaga gttgctcagc ttcaaaggca gatcgaggac ctgaaaggcg
2641atgaagccaa ggcgaaggaa acgctgaaga agtacgaggg agaaatacga cagttagagg
2701aggcccttgt gcacgccaga aaggaagaaa aagaagctgt gtcagccaga agggccctgg
2761agaatgaact ggaggctgct cagggaaatc tgagtcagac tacccaggag cagaagcagt
2821tgtctgagaa gctcaaagag gagagtgagc agaaggagca gctaagaagg ttgaagaacg
2881agatggagaa tgagcggtgg cacctgggca aaaccattga gaaactgcag aaggagatgg
2941cagacattgt tgaggcctcc cgtacctcaa ccctggagct ccagaaccag ctggatgagt
3001ataaggagaa aaaccgcagg gagctcgcag aaatgcaaag acagttgaag gagaaaacgc
3061tggaggcaga aaagtcccga ctgacagcca tgaaaatgca ggatgagatg cgtctgatgg
3121aggaagagtt acgggactac cagagagctc aggatgaagc actcacaaaa aggcagcttc
3181tggagcagac gctgaaggac ctggagtatg agctggaagc caagagtcac ctcaaagatg
3241accgcagcag gctggtcaag cagatggagg acaaggtgtc tcaactggag atggaactgg
3301aagaagagag aaacaactca gatttgctgt ctgagaggat cagtaggagc agggaacaga
3361tggagcagtt gaggaatgag ctacttcagg agagagctgc gagacaagac ttggagtgcg
3421ataagatttc cctggagagg cagaacaagg acttaaagag ccggattatc cacctggaag
3481gttcctacag gtccagcaaa gaggggctgg ttgtgcagat ggaggccagg atcgcggagc
3541tggaggaccg cctggagagt gaggagaggg atcgggccaa tcttcagcTC AGCAACCGGC
3601GGCTGGAGCG GAAAGTGAAG GAGCTGGTGA TGCAGGTGGA TGATGAGCAC CTGTCATTGA
3661CTGATCAGAA GGACCAGCTG AGCTTGCGTT TGAAAGCCAT GAAGCGGCAG GTGGAGGAGG
3721CTGAGGAGGA AATCGACAGA CTGGAAAGTT CTAAAAAGAA GCTGCAGAGG GAGCTGGAGG
3781AGCAGATGGA CATGAATGAG CATCTGCAGG GGCAGCTCAA CTCCATGAAG AAGGACTTAA
3841GACTGAAGAA GCTGCCGAGT AAAGTGCTGG ATGACATGGA TGACGACGAT GACCTCAGCA
3901CGGATGGGGG AAGCCTCTAT GAGGCGCCTG TGAGCTACAC ATTCTCCAAG GACAGCACCG
3961TCGCCAGCCA GATCTTGCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
4021CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
4081TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA TCCGCGGCCG AGTAGCCTAC
4141CATAACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)