Construct: ORF TRCN0000479379

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015116.2_s317c1
Derived from:
ccsbBroadEn_12056
DNA Barcode:
GTGGGCATATAACACATGTAAGCG
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RC3H2 (54542)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479379
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54542 RC3H2 ring finger and CCCH-type d... NM_001354486.2 99.8% 99.8% 417C>T;1502T>A
2 human 54542 RC3H2 ring finger and CCCH-type d... NM_018835.4 44.8% 42.6% (many diffs)
3 human 54542 RC3H2 ring finger and CCCH-type d... NM_001354478.2 42.2% 40.1% (many diffs)
4 human 54542 RC3H2 ring finger and CCCH-type d... NM_001354479.2 42% 40% (many diffs)
5 human 54542 RC3H2 ring finger and CCCH-type d... NM_001354482.2 41.3% 39.3% (many diffs)
6 human 54542 RC3H2 ring finger and CCCH-type d... NM_001100588.3 40% 38% (many diffs)
7 mouse 319817 Rc3h2 ring finger and CCCH-type z... NM_001290642.1 40.2% 40.1% (many diffs)
8 mouse 319817 Rc3h2 ring finger and CCCH-type z... NM_001100591.1 38.1% 38% (many diffs)
9 mouse 319817 Rc3h2 ring finger and CCCH-type z... XM_006498124.3 38.1% 38% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1584
ORF length:
1518
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc tgtgcaggca gctcaatgga cagaatttct gtcctgtcca atctgctata
121atgaatttga tgagaatgtg cacaaaccca tcagtttagg ttgttcacac actgtttgca
181agacctgctt gaataaactt catcgaaaag cttgtccttt tgaccagact gccatcaaca
241cagatattga tgtacttcct gtcaacttcg cacttctcca gttagttgga gcccaggtac
301cagatcatca gtcaattaag ttaagtaatc taggtgagaa taaacactat gaggttgcaa
361agaaatgcgt tgaggatttg gcactctact taaaaccact aagtggaggt aaaggtgtag
421ctagcttgaa ccagagtgca ctgagccgtc caatgcaaag gaaactggtg acacttgtaa
481attgtcaact ggtggaggaa gaaggtcgtg taagagccat gcgagcagct cgttcccttg
541gagaaagaac tgtaacagaa ctgatattac agcaccagaa ccctcagcag ttgtctgcca
601atctatgggc cgctgtcagg gctcgaggat gccagttttt agggccagct atgcaagaag
661aggccttgaa gctggtgtta ctggcattag aagatggttc tgccctctca aggaaagttc
721tggtactttt tgttgtgcag agactagaac caagatttcc tcaggcatca aaaacaagta
781ttggtcatgt tgtgcaacta ctgtatcgag cttcttgttt taaggttacc aaaagagatg
841aagactcttc cctaatgcag ctgaaggagg aatttcggag ttatgaagca ttacgcagag
901aacatgatgc ccaaattgtt catattgcca tggaagcagg actccgtatt tcacctgaac
961agtggtcctc tcttttgtat ggtgatttgg ctcataaatc acacatgcag tctatcattg
1021ataagctaca gtctccagag tcatttgcaa agagtgtcca ggaattgaca attgttttgc
1081aacgaacagg tgacccagct aacttaaata gactgaggcc tcatttagag cttcttgcaa
1141acatagaccc taatccagac gctgtttcac caacttggga gcagctggaa aatgcaatgg
1201tagctgttaa aacagtagtt catggccttg tggacttcat acaaaattat agtagaaaag
1261gccatgagac ccctcagccT CAGCCAAACA GCAAATACAA GACTAGCATG TGCCGAGATT
1321TGCGACAGCA AGGGGGTTGT CCACGAGGAA CAAATTGTAC ATTTGCCCAT TCTCAGGAAG
1381AGCTTGAAAA GTGTAACCCC CGTGGACTAT ATCTTCATTG TTGTCTCCTT TCCTCAGTGG
1441CTAGCTTGGG CACTGTACAT AATGAGCTCT ACAAGCAGCA GCATTGTGAT AGAGAGAAGA
1501TAAGTGTGTG TGCAGTGAAA AGAGCAGAAA CATGCTTCTC TTCTCAGTTT TTTTCCCCAC
1561TTGAAGAGCC TAGAGAAGAG GATTACCCAA CTTTCTTGTA CAAAGTGGTT GATATCGGTA
1621AGCCTATCCC TAACCCTCTC CTCGGTCTCG ATTCTACGTA GTAATGAACT AGTCCGTAAC
1681TTGAAAGTAT TTCGATTTCT TGGCTTTATA TATCTTGTGG AAAGGACGAG TGGGCATATA
1741ACACATGTAA GCGACGCGTT AAGTCgacaa tcaacctctg gattacaaaa tttgtgaaag
1801att

Download FASTA (ORF) (Full)