Construct: ORF TRCN0000479395

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000152.1_s317c1
Derived from:
ccsbBroadEn_05725
DNA Barcode:
GTAGGCACGAAATGGCCCTAATGA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM153CP (653316)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479395
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285596 FAM153A family with sequence simila... XM_011534528.2 44.3% 43.9% (many diffs)
2 human 202134 FAM153B family with sequence simila... NM_001265615.1 36.5% 36.1% (many diffs)
3 human 285596 FAM153A family with sequence simila... NM_173663.4 36.4% 36.1% (many diffs)
4 human 285596 FAM153A family with sequence simila... XM_006714848.3 36.4% 36.1% (many diffs)
5 human 285596 FAM153A family with sequence simila... XM_006714849.3 36.4% 36.1% (many diffs)
6 human 285596 FAM153A family with sequence simila... XM_011534521.3 36.4% 36.1% (many diffs)
7 human 285596 FAM153A family with sequence simila... XM_011534522.2 36.4% 36.1% (many diffs)
8 human 285596 FAM153A family with sequence simila... XM_011534523.2 36.4% 36.1% (many diffs)
9 human 285596 FAM153A family with sequence simila... XM_017009366.1 36.4% 36.1% (many diffs)
10 human 285596 FAM153A family with sequence simila... XM_017009367.1 36.4% 36.1% (many diffs)
11 human 285596 FAM153A family with sequence simila... XM_017009369.1 36.4% 36.1% (many diffs)
12 human 285596 FAM153A family with sequence simila... XM_017009370.1 36.4% 36.1% (many diffs)
13 human 285596 FAM153A family with sequence simila... XM_017009365.1 34% 33.7% (many diffs)
14 human 285596 FAM153A family with sequence simila... XM_017009363.1 33.8% 33.5% (many diffs)
15 human 285596 FAM153A family with sequence simila... XM_017009364.1 33.8% 33.5% (many diffs)
16 human 285596 FAM153A family with sequence simila... XM_017009362.1 33.3% 33% (many diffs)
17 human 285596 FAM153A family with sequence simila... XM_011534520.2 29.3% 29% (many diffs)
18 human 285596 FAM153A family with sequence simila... XM_005265889.3 29.1% 28.9% (many diffs)
19 human 285596 FAM153A family with sequence simila... XM_017009352.1 29.1% 28.9% (many diffs)
20 human 285596 FAM153A family with sequence simila... XM_017009353.1 29.1% 28.9% (many diffs)
21 human 285596 FAM153A family with sequence simila... XM_017009354.1 29.1% 28.9% (many diffs)
22 human 285596 FAM153A family with sequence simila... XM_017009355.1 29.1% 28.9% (many diffs)
23 human 285596 FAM153A family with sequence simila... XM_017009356.1 29.1% 28.9% (many diffs)
24 human 285596 FAM153A family with sequence simila... XM_017009357.1 29.1% 28.9% (many diffs)
25 human 285596 FAM153A family with sequence simila... XM_017009358.1 29.1% 28.9% (many diffs)
26 human 285596 FAM153A family with sequence simila... XM_017009359.1 29.1% 28.9% (many diffs)
27 human 285596 FAM153A family with sequence simila... XM_017009360.1 29.1% 28.9% (many diffs)
28 human 285596 FAM153A family with sequence simila... XM_017009361.1 29.1% 28.9% (many diffs)
29 human 653316 FAM153CP family with sequence simila... NR_159407.1 28.2% 1_241del;584_1210del
30 human 653316 FAM153CP family with sequence simila... NR_149722.1 13.4% 1_555del;898_2552del
31 human 285596 FAM153A family with sequence simila... NR_146227.1 7.2% (many diffs)
32 human 285596 FAM153A family with sequence simila... NR_146226.1 7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
411
ORF length:
342
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggtggacaaa gacacagaga gagacattga gatgaaacgg caacTACGGC
121GACTACGGGA GCTCCACCTA TACAGCACAT GGAAGAAGTA CCAAGAGGCG ATGAAGACAT
181CCTTGGGAGT TCCACAACGT GGTGACCTGG AAGACCTGGA GGAGCATCTG CCAGGGCAGA
241CAGTCTCTGA GGAAGCCACA GGGGTTCACA TGATGCAGGT GGACCCAGCC ACACCGGCAA
301AGAAATTGGA AGACTCCACC ATTACAGGCA GCCACCAGCA GATGTCAGCA AGTCCTTCCT
361CTGCACCTGC AGAAGAAGCA ACAGAAAAGA CCAAAGTGGA AGAGGAAGTG TTGCCAACTT
421TCTTGTACAA AGTGGTTGAT ATCGGTAAGC CTATCCCTAA CCCTCTCCTC GGTCTCGATT
481CTACGTAGTA ATGAACTAGT CCGTAACTTG AAAGTATTTC GATTTCTTGG CTTTATATAT
541CTTGTGGAAA GGACGAGTAG GCACGAAATG GCCCTAATGA ACGCGTTAAG TCgacaatca
601acctctggat tacaaaattt gtgaaagatt

Download FASTA (ORF) (Full)