Construct: ORF TRCN0000479425

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005283.1_s317c1
Derived from:
ccsbBroadEn_06701
DNA Barcode:
ACCAATCCGTGTGAATCCACAGTA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PDE3A (5139)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479425
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 5139 PDE3A phosphodiesterase 3A NM_000921.4 99.9% 100% 1194C>T;2172C>G
2 human 5139 PDE3A phosphodiesterase 3A XM_017019420.1 94.2% 92% (many diffs)
3 human 5139 PDE3A phosphodiesterase 3A XM_017019421.2 71.8% 71.8% 0_1ins963;231C>T;1209C>G
4 human 5139 PDE3A phosphodiesterase 3A NM_001244683.1 70.7% 70.4% (many diffs)
5 mouse 54611 Pde3a phosphodiesterase 3A, cGMP ... XM_011241595.2 61.6% 62.9% (many diffs)
6 mouse 54611 Pde3a phosphodiesterase 3A, cGMP ... XM_006506979.3 61.6% 63% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
3492
ORF length:
3423
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat ggcagtgccc ggcgacgctg cacgagtcag ggacaagccc gtccacagtg
121gggtgagtca agcccccacg gcgggccggg actgccacca tcgtgcggac cccgcatcgc
181cgcgggactc gggctgccgt ggctgctggg gagacctggt gctgcagccg ctccggagct
241ctcggaaact ttcctccgcg ctgtgcgcgg gctccctgtc ctttctgctg gcgctgctgg
301tgaggctggt ccgcggggag gtcggctgtg acctggagca gtgtaaggag gcggcggcgg
361cggaggagga ggaagcagcc ccgggagcag aagggggcgt cttcccgggg cctcggggag
421gtgctcccgg gggcggtgcg cggctcagcc cctggctgca gccctcggcg ctgctcttca
481gtctcctgtg tgccttcttc tggatgggct tgtacctcct gcgcgccggg gtgcgcctgc
541ctctggctgt cgcgctgctg gccgcctgct gcggggggga agcgctcgtc cagattgggc
601tgggcgtcgg ggaggatcac ttactctcac tccccgccgc gggggtggtg ctcagctgct
661tggccgccgc gacatggctg gtgctgaggc tgaggctggg cgtcctcatg atcgccttga
721ctagcgcggt caggaccgtg tccctcattt ccttagagag gttcaaggtc gcctggagac
781cttacctggc gtacctggcc ggcgtgctgg ggatcctctt ggccaggtac gtggaacaaa
841tcttgccgca gtccgcggag gcggctccaa gggagcattt ggggtcccag ctgattgctg
901ggaccaagga agatatcccg gtgtttaaga ggaggaggcg gtccagctcc gtcgtgtccg
961ccgagatgtc cggctgcagc agcaagtccc atcggaggac ctccctgccc tgtataccga
1021gggaacagct catggggcat tcagaatggg accacaaacg agggccaaga ggatcacagt
1081cttcaggaac cagtattact gtggacatcg ccgtcatggg cgaggcccac ggcctcatta
1141ccgacctcct ggcagaccct tctcttccac caaacgtgtg cacatccttg agagccgtga
1201gcaacttgct cagcacacag ctcaccttcc aggccattca caagcccaga gtgaatcccg
1261ttacttcgct cagtgaaaac tatacctgtt ctgactctga agagagctct gaaaaagaca
1321agcttgctat tccaaagcgc ctgagaagga gtttgcctcc tggcttgttg agacgagttt
1381cttccacttg gaccaccacc acctcggcca caggtctacc caccttggag cctgcaccag
1441tacggagaga ccgcagcacc agcatcaaac tgcaggaagc accttcatcc agtcctgatt
1501cttggaataa tccagtgatg atgaccctca ccaaaagcag atcctttact tcatcctatg
1561ctatttctgc agctaaccat gtaaaggcta aaaagcaaag tcgaccaggt gccctcgcta
1621aaatttcacc tctttcatcg ccctgctcct cacctctcca agggactcct gccagcagcc
1681tggtcagcaa aatttctgca gtgcagtttc cagaatctgc tgacacaact gccaaacaaa
1741gcctaggttc tcacagggcc ttaacttaca ctcagagtgc cccagaccta tcccctcaaa
1801tcctgactcc acctgttata tgtagcagct gtggcagacc atattcccaa gggaatcctg
1861ctgatgagcc cctggagaga agtggggtag ccactcggac accaagtaga acagatgaca
1921ctgctcaagt tacctctgat tatgaaacca ataacaacag tgacagcagt gacattgtac
1981agaatgaaga tgaaacagag tgcctgagag agcctctgag gaaagcatcg gcttgcagca
2041cctatgctcc tgagaccatg atgtttctgg acaaaccaat tcttgctccc gaacctcttg
2101tcatggataa cctggactca attatggagc agctaaatac ttggaatttt ccaatttttg
2161atttagtgga aaatatagga agaaaatgtg gccgtattct tagtcaggta tcttacagac
2221tttttgaaga catgggcctg tttgaagctt ttaaaattcc aattagggaa tttatgaatt
2281attttcatgc tttggagatt ggatataggg atattcctta tcataacaga atccatgcca
2341ctgatgtttt acatgctgtt tggtatctta ctacacagcc tattccaggc ctctcaactg
2401tgattaatga tcatggttca accagtgatt cagattctga cagtggattt acacatggac
2461atatgggata tgtattctca aaaacgtata atgtgacaga tgataaatac ggatgtctgt
2521ctgggaatat ccctgccttg gagttgatgg cgctgtatgt ggctgcagcc atgcacgatt
2581atgatcatcc aggaaggact aatgctttcc tggttgcaac tagtgctcct caggcggtgc
2641tatataacga tcgttcagtt ttggagaatc atcacgcagc tgctgcatgg aatcttttca
2701tgtcccggcc agagtataac ttcttaatta accttgacca tgtggaattt aagcatttcc
2761gtttccttgt cattgaagca attttggcca ctgacctgaa gaaacacttt gacttcgtag
2821ccaaatttaa tggcaaggta aatgatgatg ttggaataga ttggaccaat gaaaatgatc
2881gtctactggt ttgtcaaatg tgtataaagt tggctgatat caatggtcca gctaaatgta
2941aagaactcca tcttcagtgg acagatggta ttgtcaatga attttatgaa cagggtgatg
3001aagaggccag ccttggatta cccataagcc ccttcatgga tcgttctgct cctcagctgg
3061ccaaccttca ggaatccttc atctctcaca ttgtggggcc tctgtgcaac tcctatgatt
3121cagcaggact aatgcctgga aaatgggtgg aagacagcga tgagtcagga gatactgatg
3181acccagaaga agaggaggaa gaagcaccag caccaaatga agaggaaacc tgtgaaaata
3241atgaaTCTCC AAAAAAGAAG ACTTTCAAAA GGAGAAAAAT CTACTGCCAA ATAACTCAGC
3301ACCTCTTACA GAACCACAAG ATGTGGAAGA AAGTCATTGA AGAGGAGCAA CGGTTGGCAG
3361GCATAGAAAA TCAATCCCTG GACCAGACCC CTCAGTCGCA CTCTTCAGAA CAGATCCAGG
3421CTATCAAGGA AGAAGAAGAA GAGAAAGGGA AACCAAGAGG CGAGGAGATA CCAACCCAAA
3481AGCCAGACCA GTTGCCAACT TTCTTGTACA AAGTGGTTGA TATCGGTAAG CCTATCCCTA
3541ACCCTCTCCT CGGTCTCGAT TCTACGTAGT AATGAACTAG TCCGTAACTT GAAAGTATTT
3601CGATTTCTTG GCTTTATATA TCTTGTGGAA AGGACGAACC AATCCGTGTG AATCCACAGT
3661AACGCGTTAA GTCgacaatc aacctctgga ttacaaaatt tgtgaaagat t

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