Construct: ORF TRCN0000479500

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014830.1_s317c1
Derived from:
ccsbBroadEn_04622
DNA Barcode:
ATGCTTCCGGATTATGGTACCGTC
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TP53INP1 (94241)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000479500
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 94241 TP53INP1 tumor protein p53 inducible... NM_033285.4 100% 100%
2 human 94241 TP53INP1 tumor protein p53 inducible... XM_011517386.2 100% 100%
3 human 94241 TP53INP1 tumor protein p53 inducible... NM_001135733.2 67.3% 66.2% (many diffs)
4 mouse 60599 Trp53inp1 transformation related prot... NM_021897.3 87.9% 87.5% (many diffs)
5 mouse 60599 Trp53inp1 transformation related prot... NM_001199105.1 60.2% 58.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
789
ORF length:
720
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcaccat gttccagagg ctgaataaaa tgtttgtggg tgaagtcagt tcttcctcca
121accaagaacc agaattcaat gagaaagaag atgatgaatg gattcttgtt gacttcatag
181atacttgcac tggtttctca gcagaagaag aagaagaaga ggaggacatc agtgaagagt
241cacctactga gcacccttca gtcttttcct gtttaccggc atctcttgag tgcttggctg
301atacaagtga ttcctgcttt ctccagtttg agtcatgtcc aatggaggag agctggttta
361tcaccccacc cccatgtttt actgcaggtg gattaaccac tatcaaggtg gaaacaagtc
421ctatggaaaa ccttctcatt gaacatCCCA GCATGTCTGT CTATGCTGTG CATAACTCCT
481GCCCTGGTCT CAGTGAGGCC ACCCGTGGGA CTGATGAATT ACATAGCCCA AGTAGTCCCA
541GAGTGGAAGC TCAAAATGAA ATGGGGCAGC ATATTCATTG TTATGTTGCA GCTCTTGCTG
601CTCATACAAC TTTTCTGGAA CAACCCAAGA GCTTTCGCCC TTCCCAGTGG ATAAAAGAAC
661ACAGTGAAAG ACAGCCTCTT AACAGAAATA GCCTTCGTCG CCAAAATCTT ACCAGGGATT
721GCCACCCTCG GCAAGTCAAG CACAATGGCT GGGTTGTTCA TCAGCCCTGC CCGCGTCAGT
781ACAATTACTT GCCAACTTTC TTGTACAAAG TGGTTGATAT CGGTAAGCCT ATCCCTAACC
841CTCTCCTCGG TCTCGATTCT ACGTAGTAAT GAACTAGTCC GTAACTTGAA AGTATTTCGA
901TTTCTTGGCT TTATATATCT TGTGGAAAGG ACGAATGCTT CCGGATTATG GTACCGTCAC
961GCGTTAAGTC gacaatcaac ctctggatta caaaatttgt gaaagatt

Download FASTA (ORF) (Full)