Construct: ORF TRCN0000479550
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017682.1_s317c1
- Derived from:
- ccsbBroadEn_08474
- DNA Barcode:
- ATCACGGATCGCGCTCTGGTGTGC
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- FAM90A1 (55138)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000479550
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55138 | FAM90A1 | family with sequence simila... | NM_001319982.1 | 99.5% | 98.7% | (many diffs) |
| 2 | human | 55138 | FAM90A1 | family with sequence simila... | NM_018088.3 | 99.5% | 98.7% | (many diffs) |
| 3 | human | 55138 | FAM90A1 | family with sequence simila... | XM_011520719.1 | 99.5% | 98.7% | (many diffs) |
| 4 | human | 55138 | FAM90A1 | family with sequence simila... | XM_017019547.1 | 99.5% | 98.7% | (many diffs) |
| 5 | human | 55138 | FAM90A1 | family with sequence simila... | XM_024449029.1 | 99.5% | 98.7% | (many diffs) |
| 6 | human | 55138 | FAM90A1 | family with sequence simila... | XM_024449030.1 | 99.5% | 98.7% | (many diffs) |
| 7 | human | 100287045 | FAM90A26 | family with sequence simila... | NM_001358418.1 | 96.4% | 93.5% | (many diffs) |
| 8 | human | 112268387 | LOC112268387 | putative protein FAM90A16P/... | XM_024452665.1 | 96.3% | 93.7% | (many diffs) |
| 9 | human | 55138 | FAM90A1 | family with sequence simila... | XM_006719097.3 | 90.6% | 86.6% | (many diffs) |
| 10 | human | 112268395 | LOC112268395 | putative protein FAM90A15P | XM_024452674.1 | 65.3% | 62.9% | (many diffs) |
| 11 | human | 389633 | FAM90A25P | family with sequence simila... | NR_073395.1 | 64.3% | (many diffs) | |
| 12 | human | 441317 | FAM90A7P | family with sequence simila... | NR_046343.1 | 62.6% | (many diffs) | |
| 13 | human | 729689 | FAM90A2P | family with sequence simila... | NR_046354.1 | 45.3% | (many diffs) | |
| 14 | human | 441328 | FAM90A10P | family with sequence simila... | NR_046351.1 | 41.5% | (many diffs) | |
| 15 | human | 112268390 | LOC112268390 | putative protein FAM90A12P | XM_024452667.1 | 31.3% | 29.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1458
- ORF length:
- 1392
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcatgat ggcacgtcgt gaccccaaac ctggggcaaa gagactggtg agagcccaga 121 ccctccagaa gcagcggagg gccccagttg ggccaagggc tcccccgccc gatgaagaag 181 atcccaggct caagtgcaaa aactgtgagg cctttggcca cacggccaga agtaccaggt 241 gccccatgaa gtgctggaag gcagccctgg ttccaccgaa ctttggggaa aaggaaggga 301 aggaaaacct gaaaccatgg aagccccagg ttgaagcgaa ccctgggccc ttgaacaagg 361 ataagggaga gaaggaagag agaccaaggc cacaagaccc gcagaggaag gctctcctcc 421 acatattttc cgggaaacct ccagagaagc cgctgccaaa tcaaaaagga tccacggaat 481 cttctgatta tctgagggtt gcaagcgggc caatgccggt ccacacaacc agtaagaggc 541 cgcgtgtgga ccctgtcctc tctgatcgct cagctaccga aatgtctgac aggggctccg 601 tcttagcttc actgtctccc ctcagaaaag ccagtctgag ctcctcctca agtcttggac 661 caaaggaaag acagacaggg gctgcggccg acatccctca gactgcagtc aggcaccagg 721 gccccgagcc tctcctcgtg gtgaagccga cacacagcag ccctgagggt ggctgtcgag 781 aagttcccca ggctgcctcc aaaacccacg gcctgctcca ggccgccaga ccccaggcac 841 aagacaaacg tcctgcggtg acctcacagc cctgcccacc agccgccaca cacagcttgg 901 gcctaggctc caatctcagc ttcgggccag gagccaagag atctgccccg gctccgattc 961 aggcttgcct gaacttcccc aagaaaccga gactgggtcc cttccagatc cccgaaagcg 1021 ccatccaggg aggtgagctg ggggccccgg agaatctcca acctctgcca gccgcaaccg 1081 aacttggacc acgtacgtca ccccagatag gcacgaggac acCCGCCCAG GTGCTTAGCG 1141 GCGACCGGCA GCCTCCGCAC AGCAGACCTT GCCTGCCTAC TGCCCAGGCC TGCACCATGT 1201 CCCATCACCC AGCGGCCAGC CATGATGGGG CCCAGCCTCT CAGAGTGCTC TTTCGGAGAC 1261 TGGAAAACGG ACGCTGGAGC TCCAGCCTGC TGACGGCCCC CTCATTTCAC TCTCCTGAGA 1321 AGCCGGGAGC CTTCCTCGCT CAGAGCCCTC ATGTCTCAGA GAAGTCTGAG GGTCCCTGTG 1381 TTCGTGTCCC ACCAAGCGTC CTCTATGAGG ACCTTCAGGT TCCCTCCTCC TCAGAGGACA 1441 GCGATTCTGA CCTGGAGTGC CCAACTTTCT TGTACAAAGT GGTTGATATC GGTAAGCCTA 1501 TCCCTAACCC TCTCCTCGGT CTCGATTCTA CGTAGTAATG AACTAGTCCG TAACTTGAAA 1561 GTATTTCGAT TTCTTGGCTT TATATATCTT GTGGAAAGGA CGAATCACGG ATCGCGCTCT 1621 GGTGTGCACG CGTTAAGTCg acaatcaacc tctggattac aaaatttgtg aaagatt